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Positive stranded ssRNA viruses superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 27 significant domains in 27 proteins.

Showing genomes 1 to 25 of 49
  1 2   Next Last

Bacillus halodurans C-125 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15615268|ref|NP_243571.1|   0.0000551   72-138   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Bacillus cereus 03BB102 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|225863547|ref|YP_002748925.1|   0.000000977   1531-1763   Tetraviridae-like VP  

Bacillus anthracis str. A0248 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|229604812|ref|YP_002866092.1|   0.000000247   1539-1762   Tetraviridae-like VP  

Rhodopirellula baltica SH 1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|32471540|ref|NP_864533.1|   0.00000212   5135-5342   Tetraviridae-like VP  
gi|32473758|ref|NP_866752.1|   0.0000000000000165   6037-6278   Tetraviridae-like VP  

Candidatus Solibacter usitatus Ellin6076 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116623171|ref|YP_825327.1|   2.59e-36   274-547   Tetraviridae-like VP  
 
Weak hits:
gi|116626064|ref|YP_828220.1|   0.000259   617-669   Comoviridae-like VP  

Desulfotalea psychrophila LSv54 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|51247027|ref|YP_066910.1|   0.000000694   797-1007   Tetraviridae-like VP  

Cupriavidus metallidurans CH34 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|94152648|ref|YP_582050.1|   0.0000000647   244-361   Tetraviridae-like VP  

Burkholderia cenocepacia HI2424 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116687142|ref|YP_840389.1|   0.00000113   66-276   Tetraviridae-like VP  
 
Weak hits:
gi|116690205|ref|YP_835828.1|   0.0271   284-340   Tymoviridae-like VP  

Xanthomonas axonopodis pv. citri str. 306 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|77748525|ref|NP_640802.2|   0.000000000000294   18-192   Tetraviridae-like VP  

Xanthomonas oryzae pv. oryzae PXO99A has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188575031|ref|YP_001911960.1|   4.24e-18   16-192   Tetraviridae-like VP  
gi|188577273|ref|YP_001914202.1|   0.000000177   177-293   Tetraviridae-like VP  

Xanthomonas campestris pv. campestris str. B100 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188989861|ref|YP_001901871.1|   0.00000000436   18-190   Tetraviridae-like VP  

Azotobacter vinelandii DJ has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|226943724|ref|YP_002798797.1|   0.000000177   363-461   Tetraviridae-like VP  

Lactobacillus acidophilus La-14 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|488767305|ref|YP_007937402.1|   0.0000625   157-224   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Lactobacillus acidophilus NCFM has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|124388247|ref|YP_193425.2|   0.0000625   157-224   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Bacillus toyonensis BCT-7112 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|557623651|ref|YP_008784783.1|   0.000000553   1533-1762   Tetraviridae-like VP  

Bacillus thuringiensis HD-771 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|402561317|ref|YP_006604041.1|   0.00000565   1532-1762   Tetraviridae-like VP  

Bacillus thuringiensis HD-789 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|434374630|ref|YP_006609274.1|   0.00000589   1531-1762   Tetraviridae-like VP  

Bacillus thuringiensis serovar konkukian str. 97-27 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|49477283|ref|YP_035806.1|   0.000000271   1539-1763   Tetraviridae-like VP  

Bacillus cereus biovar anthracis str. CI has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|301053227|ref|YP_003791438.1|   0.0000002   1539-1762   Tetraviridae-like VP  

Bacillus cereus AH820 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|218902803|ref|YP_002450637.1|   0.0000004   1539-1762   Tetraviridae-like VP  

Bacillus cereus G9842 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|218896622|ref|YP_002445033.1|   0.00000518   1531-1762   Tetraviridae-like VP  

Bacillus cereus Q1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|221642165|ref|YP_002533252.1|   0.00000541   1531-1763   Tetraviridae-like VP  
 
Weak hits:
gi|222095310|ref|YP_002529370.1|   0.000471   1532-1762   Tetraviridae-like VP  

Bacillus cereus F837/76 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376265526|ref|YP_005118238.1|   0.00000224   1520-1762   Tetraviridae-like VP  

Bacillus cereus E33L has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|52143769|ref|YP_083059.1|   0.000000001   1521-1763   Tetraviridae-like VP  

Bacillus anthracis str. H9401 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386735397|ref|YP_006208578.1|   0.000000247   1539-1762   Tetraviridae-like VP  

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Showing genomes 1 to 25 of 49

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Select to display   Genome       Domains   Proteins
No Yes ALL   180590 180590
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 4 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   3 3
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 5 5
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3631 2665
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   65 65
No Yes Uniprot 2018_03 genome   130788 118151
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   569 336
No Yes PDB chains (SCOP 1.75) (PDB)   163 157
No Yes Protein Data Bank (all PDB sequenc)   3183 2887
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6634 6441
No Yes TargetDB (Targets)   13 10
No Yes UniProt viral sequences (Viral)   35200 31852

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