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Positive stranded ssRNA viruses superfamily domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 163 significant domains in 157 proteins.

     

Sequence ID   Evalue   Region   Family  
1a6cA   2.4e-62   2-175   Comoviridae-like VP  
  1.23e-53   351-512   Comoviridae-like VP  
  1.13e-52   177-348   Comoviridae-like VP  
1al21   1.65e-131   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ar61   8.62e-133   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ar71   3.57e-133   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ar72   7.31e-116   1-267   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ar73   1.32e-76   1-235   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ar91   6.97e-132   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1auyA   3.38e-60   2-188   Tymoviridae-like VP  
1aym1   2.09e-125   17-265   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1aym2   2.04e-108   1-256   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1aym3   5.13e-75   1-237   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1aym4   1.18e-49   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1b35A   9.61e-89   1-259   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1b35B   1.81e-51   2-250   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1b35C   3.58e-78   1-282   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1b35D   0.0000701   5-57   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bbt1   3.91e-79   2-210   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bev1   8.95e-92   20-260   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bev2   3.83e-110   1-244   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bev3   2.99e-67   1-241   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bev4   1.18e-37   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1bmv1   9.68e-76   2-184   Comoviridae-like VP  
1bmv2   3.04e-85   184-370   Comoviridae-like VP  
  2.21e-79   1-182   Comoviridae-like VP  
1c8m2   7.75e-103   1-247   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1c8m4   4.81e-55   1-77   SCOPe  
1c8nA   6.36e-71   63-275   Tombusviridae-like VP  
1cov1   5.96e-163   13-278   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1cov2   3.8e-123   1-262   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1cov3   1.6e-80   33-236   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1cov4   5.02e-51   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1cwpA   2.09e-89   32-175   Bromoviridae-like VP  
1d3e1   2.09e-125   17-265   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1d3e2   1.5e-102   1-247   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1d4m1   1.04e-163   14-281   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1d4m2   2.73e-119   1-259   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1d4m3   8.44e-81   1-236   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1d4m4   1.44e-50   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ddlA   1.63e-67   1-187   Tymoviridae-like VP  
1dgi1   5.87e-132   14-273   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1dgi2   2.07e-114   1-263   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1dgi4   7.69e-42   2-61   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1e57A   2.24e-68   3-187   Tymoviridae-like VP  
1eah1   7.16e-132   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1eah2   1.06e-110   1-266   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1eah3   1.34e-74   1-235   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1eah4   7.69e-47   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ev11   2.84e-154   13-278   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ev12   9.65e-119   1-253   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ev13   5.55e-77   1-238   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ev14   8.2e-50   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1f15A   4.61e-94   29-218   Bromoviridae-like VP  
1f2nA   8.58e-65   28-237   Tombusviridae-like VP  
1f8vA   1.01e-168   1-355   Nodaviridae-like VP  
1f8vD   0.0000000000000701   2-40   Nodaviridae-like VP  
1fmd1   4e-74   2-206   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fmd2   2.92e-66   1-214   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fmd3   8.36e-62   3-218   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fod4   6.15e-16   15-84   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fpn1   4.43e-125   17-264   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fpn2   1.85e-107   1-258   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fpn3   1.89e-73   1-234   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1fpn4   4.36e-49   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1h8tA   1.3e-165   13-281   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1h8tB   7.34e-121   1-258   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1h8tC   3.06e-80   1-235   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1h8tD   5.13e-50   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1hxs1   6.97e-132   28-287   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1hxs2   3.73e-116   1-267   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1hxs3   1.76e-76   1-234   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1hxs4   1.49e-48   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ihmA   4.01e-158   30-519   Caliciviridae-like VP  
1js9A   2.98e-88   31-173   Bromoviridae-like VP  
1k5mB   2.16e-111   1-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1lajA   1.63e-95   29-217   Bromoviridae-like VP  
1m111   7.25e-165   13-278   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1m112   2.99e-117   1-254   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1m113   2.52e-80   1-237   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mec1   1.63e-80   1-263   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mec3   1.03e-60   36-229   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mqtA   1.34e-162   13-280   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mqtB   9.92e-122   1-260   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mqtC   2.14e-81   1-238   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1mqtD   3.49e-49   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ncqA   2.07e-113   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ncqB   1.68e-111   1-256   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ncqC   4.49e-71   1-234   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ncqD   3.9e-42   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1nd3D   4.26e-50   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ng0A   4.72e-56   37-252   Tombusviridae-like VP  
1nn83   2.12e-76   1-234   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1novA   2.54e-173   8-355   Nodaviridae-like VP  
1ny71   3.23e-74   2-188   Comoviridae-like VP  
1ny72   3.82e-81   184-369   Comoviridae-like VP  
  9.53e-76   1-182   Comoviridae-like VP  
1ohfA   7.19e-221   42-629   Tetraviridae-like VP  
1oopA   2.16e-166   13-280   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1oopB   2.01e-122   1-260   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1oopC   4.01e-80   1-238   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1oopD   2.15e-49   2-67   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1opoA   4.72e-78   82-348   Tombusviridae-like VP  
1pgl1   7.38e-76   2-184   Comoviridae-like VP  
1pgl2   5.81e-85   184-370   Comoviridae-like VP  
  2.12e-79   1-182   Comoviridae-like VP  
1pgw2   5.07e-85   165-351   Comoviridae-like VP  
  3.18e-71   1-163   Comoviridae-like VP  
1pov0   4.97e-147   1-335   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1pvc1   3.21e-125   27-286   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1pvc2   5.49e-112   1-266   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1pvc3   3.23e-75   1-235   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1pvc4   2.82e-47   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1qgc1   2.49e-66   2-179   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1qqp1   8.07e-81   2-210   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1qqp2   3.01e-67   1-216   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1qqp3   1.8e-59   1-219   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1qqp4   0.00000000000000103   15-84   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1r1a1   8.25e-128   17-269   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1r1a2   1.19e-107   1-258   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1r1a3   6.2e-77   1-237   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1r1a4   6.69e-28   1-44   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rhi1   1.29e-117   22-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rhi2   2.4e-106   1-257   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rhi3   4.08e-69   1-235   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rhi4   8.72e-45   1-66   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rmu1   5.51e-112   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rud1   9.75e-113   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rue1   3.35e-112   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1ruh1   1.87e-112   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1rui1   1.69e-113   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1smvA   2.56e-70   46-266   Tombusviridae-like VP  
1tme1   1.81e-73   2-255   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tme2   1.09e-90   1-262   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tme3   1.74e-59   35-230   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tme4   0.00000000865   2-49   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tmf1   5.49e-77   2-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tmf2   3.92e-89   1-262   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tmf3   1.84e-60   35-230   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1tmf4   0.00000156   2-37   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1upnD   5.64e-50   2-67   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1vakA   6.77e-65   5-202   Tombusviridae-like VP  
1vb2A   5.84e-63   5-202   Tombusviridae-like VP  
1vb4A   1.44e-70   10-231   Tombusviridae-like VP  
1vbb1   3.21e-125   26-285   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1vbb3   4.32e-75   1-234   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1vbe1   3.31e-125   26-285   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1wcdJ   2.21e-200   12-431   Birnaviridae-like VP  
1xyr1   4.91e-112   1-209   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
1yc61   8.3e-85   1-138   Bromoviridae-like VP  
2bbvA   7.75e-176   21-363   Nodaviridae-like VP  
2c8iA   1.3e-165   13-281   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2df7A   2.4e-199   12-431   Birnaviridae-like VP  
2gsyA   2.58e-200   12-431   Birnaviridae-like VP  
2hwb2   1.92e-111   1-256   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2mev1   1.23e-80   1-263   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2mev2   9.81e-91   1-252   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2mev3   1.4e-60   36-229   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2mev4   0.0000000161   14-63   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2rmu1   2.66e-113   21-271   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
2tbvA   2.67e-107   69-380   Tombusviridae-like VP  
2vq0A   2.26e-66   45-255   Tombusviridae-like VP  
4sbvA   5.02e-72   40-260   Tombusviridae-like VP  

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Select to display   Genome       Domains   Proteins
No Yes ALL   180590 180590
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 4 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   3 3
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 5 5
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3631 2665
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   65 65
No Yes Uniprot 2018_03 genome   130788 118151
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   569 336
No Yes PDB chains (SCOP 1.75) (PDB)   163 157
No Yes Protein Data Bank (all PDB sequenc)   3183 2887
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6634 6441
No Yes TargetDB (Targets)   13 10
No Yes UniProt viral sequences (Viral)   35200 31852

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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