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Group I dsDNA viruses superfamily domain assignments
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PDB chains (SCOP 1.75)

Network of domain occurrence in all genomes

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PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
1cn3A   2.42e-175   2-283   Papovaviridae-like VP  
1dzlA   1.01e-234   20-474   Papovaviridae-like VP  
1sidA   3.22e-184   18-382   Papovaviridae-like VP  
1sva1   1.9e-211   32-300   Papovaviridae-like VP  
1vpsA   1.32e-177   4-289   Papovaviridae-like VP  

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Select to display   Genome       Domains   Proteins
No Yes ALL   17263 17263
No Yes NCBI 2017_08 genome   254 252
No Yes Uniprot 2018_03 genome   9959 9957
No Yes NCBI viral sequences (Viral)   176 176
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   570 570
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1238 1238
No Yes UniProt viral sequences (Viral)   5061 5061

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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