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Polygalacturonase inhibiting protein PGIP family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ogqA   1.1e-63   0.0000000000306   2-311   1ogq A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2110 2110
No Yes Selaginella moellendorffii   2 2
No Yes Picea abies Norway spruce 2 2
No Yes Eucalyptus grandis v201 Rose gum 7 7
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   7 7
No Yes Citrus clementina v165   3 3
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   6 6
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 14 14
No Yes Capsella rubella v183   7 7
No Yes Arabidopsis lyrata Lyrate rockcress 7 7
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 14 14
No Yes Phaseolus vulgaris v186 French bean 7 7
No Yes Glycine max v109 Soybean 9 9
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 3 3
No Yes Malus domestica v196 Apple 3 3
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 11 11
No Yes Manihot esculenta v147 Cassava 3 3
No Yes Populus trichocarpa v156 Black cottonwood 6 6
No Yes Vitis vinifera Wine grape 3 2
No Yes Mimulus guttatus v140 Spotted monkey flower 16 15
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 6 6
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   7 7
No Yes Triticum urartu 22   8 8
No Yes Triticum aestivum 22 Bread wheat 15 15
No Yes Aegilops tauschii 22   11 11
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 6 4
No Yes Oryza meridionalis 22   7 6
No Yes Oryza glumaepatula 22   8 7
No Yes Oryza glaberrima African rice 6 6
No Yes Oryza punctata 22   8 6
No Yes Oryza nivara 22   8 5
No Yes Oryza brachyantha 22 Malo sina 6 6
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 8 8
No Yes Oryza sativa v193 Rice 8 8
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Panicum virgatum v202 Switchgrass 15 15
No Yes Setaria italica v164 Foxtail millet 9 9
No Yes Zea mays subsp. mays Maize 8 8
No Yes Zea mays v181 Maize 9 9
No Yes Sorghum bicolor Sorghum 7 7
No Yes Musa balbisiana Balbis banana 6 6
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 9 9
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 7 7
No Yes Lotus japonicus (Early assembly)   6 6
No Yes Malus x domestica (Duplicate) Apple 3 3
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes NCBI 2017_08 genome   526 522
No Yes STRING v9.0.5 (STRING)   47 47
No Yes Uniprot 2018_03 genome   999 983
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3

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