SUPERFAMILY 1.75 HMM library and genome assignments server

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Patatin family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   6832 6832
No Yes Adineta vaga   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Trichoplax adhaerens   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 2
No Yes Selaginella moellendorffii   14 14
No Yes Pinus taeda Loblolly pine 33 30
No Yes Picea abies Norway spruce 13 12
No Yes Eucalyptus grandis v201 Rose gum 40 40
No Yes Theobroma cacao B97-61/B2 v1 Cacao 17 17
No Yes Gossypium raimondii v221   27 27
No Yes Citrus clementina v165   16 16
No Yes Citrus sinensis v154 Sweet orange 13 13
No Yes Thellungiella halophila v173   7 7
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   8 8
No Yes Arabidopsis lyrata Lyrate rockcress 10 10
No Yes Arabidopsis thaliana 10 Thale cress 14 14
No Yes Carica papaya Papaya 7 7
No Yes Medicago truncatula Barrel medic 16 16
No Yes Phaseolus vulgaris v186 French bean 16 16
No Yes Glycine max v109 Soybean 20 20
No Yes Cucumis sativus v122 Cucumber 18 18
No Yes Fragaria vesca Wild strawberry 18 18
No Yes Malus domestica v196 Apple 40 39
No Yes Prunus persica v139 Peach 18 18
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 13 13
No Yes Populus trichocarpa v156 Black cottonwood 41 41
No Yes Vitis vinifera Wine grape 23 23
No Yes Mimulus guttatus v140 Spotted monkey flower 9 9
No Yes Solanum lycopersicum v.2.3 Tomato 14 14
No Yes Solanum tuberosum Potato 18 18
No Yes Actinidia chinensis Hongyang   15 15
No Yes Aquilegia coerulea v195   24 24
No Yes Triticum urartu 22   22 22
No Yes Triticum aestivum 22 Bread wheat 40 40
No Yes Aegilops tauschii 22   15 15
No Yes Brachypodium distachyon Stiff brome 16 16
No Yes Oryza barthii 22 African wild rice 12 11
No Yes Oryza meridionalis 22   11 11
No Yes Oryza glumaepatula 22   14 14
No Yes Oryza glaberrima African rice 7 7
No Yes Oryza punctata 22   18 18
No Yes Oryza nivara 22   24 19
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 14 14
No Yes Oryza sativa v193 Rice 14 14
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 11 11
No Yes Panicum virgatum v202 Switchgrass 33 33
No Yes Setaria italica v164 Foxtail millet 18 18
No Yes Zea mays subsp. mays Maize 14 14
No Yes Zea mays v181 Maize 18 17
No Yes Sorghum bicolor Sorghum 12 12
No Yes Musa balbisiana Balbis banana 16 16
No Yes Musa acuminata 22 Wild Malaysian banana 12 12
No Yes Amborella trichopoda 22   12 12
No Yes Physcomitrella patens   10 10
No Yes Cyanophora paradoxa   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes Nostoc sp. PCC 7107   2 2
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Thermincola potens JR   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Chlorobium chlorochromatii CaD3   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Candidatus Amoebophilus asiaticus 5a2   4 4
No Yes Candidatus Cardinium hertigii   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Bacteroides sp. CF50   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Spirochaeta smaragdinae DSM 11293   1 1
No Yes Spirochaeta africana DSM 8902   1 1
No Yes Flexistipes sinusarabici DSM 4947   1 1
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   3 3
No Yes Wolbachia sp. wRi   1 1
No Yes Ehrlichia canis str. Jake   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 17 17
No Yes Hordeum vulgare 22 Domesticated barley 22 22
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 17 17
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 40 39
No Yes Ricinus communis (Early assembly) Castor bean 14 14
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   22 22
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 14 14
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 14 14
No Yes Phoenix dactylifera (Early draft) Date palm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 9 9
No Yes Combined (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2364 2362
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   172 172
No Yes Uniprot 2018_03 genome   2517 2501
No Yes Global Ocean Sampling Expedition (GOS)   26 26
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   6 6
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18
No Yes TargetDB (Targets)   3 3

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