SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Notch domain superfamily domain assignments
in
all eukaryotic genomes

Assignment details

(show help)

25 selected genomes have 248 significant domains in 114 proteins.

Showing genomes 151 to 175 of 218
First Previous   1 2 3 4 5 6 7 8 9   Next Last

Ascaris suum Victoria/Ghent has 8 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
GS_09735   0.000000445   788-820   Notch domain  
  0.0000051   828-860   Notch domain  
  0.0000118   867-898   Notch domain  
GS_11180   0.0000127   250-281   Notch domain  
  0.0000235   213-242   Notch domain  
GS_21438   0.0000034   300-331   Notch domain  
  0.00000497   259-291   Notch domain  
  0.0000157   338-369   Notch domain  

Caenorhabditis elegans WormBase WS218 (WormBase) has 6 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
F02A9.6   0.0000000876   536-568   Notch domain  
  0.000000288   495-527   Notch domain  
  0.00000131   576-607   Notch domain  
R107.8   0.000000248   718-749   Notch domain  
  0.000000301   678-709   Notch domain  
  0.00000445   637-669   Notch domain  
 
Weak hits:
B0513.4a   0.0942   65-84   Notch domain  

Neospora caninum Nc-Liverpool 6.2 has 3 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
psu|NCLIV_014680   0.00000471   293-316   Notch domain  
  0.0000144   182-210   Notch domain  
  0.0000418   400-430   Notch domain  
  0.000562   361-383   Notch domain  
  0.00103   221-243   Notch domain  
  0.00824   327-350   Notch domain  
 
Weak hits:
psu|NCLIV_011720   0.0301   2668-2691   Notch domain  
psu|NCLIV_048990   0.00418   3395-3418   Notch domain  
  0.0105   312-335   Notch domain  
  0.0353   1697-1721   Notch domain  

Homo sapiens 75_37 (old version GRC) has 24 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000256646   0.000000102   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.00131   1466-1497   Notch domain  
ENSP00000263388   0.0000000798   1467-1500   Notch domain  
  0.00000101   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
ENSP00000277541   0.000000116   1489-1522   Notch domain  
  0.000000196   1529-1561   Notch domain  
  0.00000196   1448-1480   Notch domain  
ENSP00000299314   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSP00000364163   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000372751   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000389207   0.000000196   1252-1283   Notch domain  
  0.0000112   1215-1245   Notch domain  
  0.00314   1174-1203   Notch domain  
ENSP00000401321   0.0000000915   298-329   Notch domain  
  0.00000536   261-291   Notch domain  
  0.00144   220-249   Notch domain  
ENSP00000403447   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000408335   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000410674   0.000000196   1255-1286   Notch domain  
  0.0000114   1218-1248   Notch domain  
  0.00314   1177-1206   Notch domain  
ENSP00000449150   0.0000131   445-469   Notch domain  
 
Weak hits:
ENSP00000330658   0.0471   1554-1583   Notch domain  
ENSP00000356634   0.0235   1728-1758   Notch domain  

Homo sapiens (NCBI version) has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|134244285|ref|NP_000426.2|   0.0000000798   1467-1500   Notch domain  
  0.00000101   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
gi|148833508|ref|NP_060087.3|   0.000000116   1489-1522   Notch domain  
  0.000000196   1529-1561   Notch domain  
  0.00000196   1448-1480   Notch domain  
gi|24041035|ref|NP_077719.2|   0.000000102   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.00131   1466-1497   Notch domain  
gi|38202211|ref|NP_077288.2|   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
gi|55770876|ref|NP_004548.3|   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
 
Weak hits:
gi|116174738|ref|NP_064714.2|   0.0235   1728-1758   Notch domain  
gi|38045915|ref|NP_002572.2|   0.0471   1554-1583   Notch domain  

Mus musculus 63_37 (longest transcript per gene) (Duplicate) has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000015612   0.000000131   1249-1280   Notch domain  
  0.00000523   1211-1242   Notch domain  
  0.00994   1172-1200   Notch domain  
ENSMUSP00000020251   0.000068   445-469   Notch domain  
  0.00445   508-535   Notch domain  
ENSMUSP00000028288   0.000000115   1489-1522   Notch domain  
  0.000000183   1529-1561   Notch domain  
  0.00000301   1448-1480   Notch domain  
ENSMUSP00000078741   0.00000017   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.000327   1465-1497   Notch domain  
ENSMUSP00000085016   0.0000000798   1468-1501   Notch domain  
  0.00000157   1387-1419   Notch domain  
  0.00000248   1427-1459   Notch domain  

Loa loa v3.3 (Request) has 8 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
LOAG_01945T0   0.000000549   255-287   Notch domain  
  0.00000445   334-365   Notch domain  
  0.0000785   296-328   Notch domain  
LOAG_04532T0   0.00000418   136-164   Notch domain  
  0.0000122   171-202   Notch domain  
LOAG_18357T0   0.00000131   626-657   Notch domain  
  0.00000458   664-695   Notch domain  
  0.0000157   585-617   Notch domain  
 
Weak hits:
LOAG_13586T0   0.0183   59-83   Notch domain  

Wuchereria bancrofti v1.0 (Request) has 7 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
WUBG_02885T0   0.00000837   150-178   Notch domain  
  0.0000157   185-216   Notch domain  
WUBG_05613T0   0.00000116   71-102   Notch domain  
  0.0000034   150-181   Notch domain  
  0.0000693   114-143   Notch domain  
WUBG_13260T0   0.000000523   112-143   Notch domain  
  0.00000122   47-79   Notch domain  
  0.00157   91-105   Notch domain  
 
Weak hits:
WUBG_02413T0   0.0288   372-395   Notch domain  
  0.0955   405-427   Notch domain  

Brugia malayi v1.0 (Duplicate) has 8 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
Bm1_32030   0.000000824   99-129   Notch domain  
  0.00000288   136-167   Notch domain  
  0.00000615   57-89   Notch domain  
Bm1_33555   0.00000536   177-205   Notch domain  
  0.0000157   212-243   Notch domain  
Bm1_42270   0.00000109   239-270   Notch domain  
  0.00000484   318-349   Notch domain  
  0.0000732   281-311   Notch domain  
 
Weak hits:
Bm1_54710   0.051   64-81   Notch domain  

Homo sapiens 69_37 has 25 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000256646   0.000000102   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.00131   1466-1497   Notch domain  
ENSP00000263388   0.0000000798   1467-1500   Notch domain  
  0.00000101   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
ENSP00000277541   0.000000116   1489-1522   Notch domain  
  0.000000196   1529-1561   Notch domain  
  0.00000196   1448-1480   Notch domain  
ENSP00000299314   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSP00000389207   0.000000196   1252-1283   Notch domain  
  0.0000112   1215-1245   Notch domain  
  0.00314   1174-1203   Notch domain  
ENSP00000398123   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000446616   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000448089   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000448391   0.0000000915   298-329   Notch domain  
  0.00000536   261-291   Notch domain  
  0.00144   220-249   Notch domain  
ENSP00000449920   0.000000196   1255-1286   Notch domain  
  0.0000114   1218-1248   Notch domain  
  0.00314   1177-1206   Notch domain  
ENSP00000450291   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSP00000464488   0.000000102   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.00131   1466-1497   Notch domain  
 
Weak hits:
ENSP00000330658   0.0471   1554-1583   Notch domain  
ENSP00000356633   0.0235   1728-1758   Notch domain  

Pan troglodytes 69_2.1.4 has 9 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000009106   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSPTRP00000018116   0.0000000798   1467-1500   Notch domain  
  0.00000101   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
ENSPTRP00000036924   0.000000116   1489-1522   Notch domain  
  0.000000196   1529-1561   Notch domain  
  0.00000196   1448-1480   Notch domain  
ENSPTRP00000059022   0.000000196   1251-1282   Notch domain  
  0.0000114   1214-1244   Notch domain  
  0.00314   1173-1202   Notch domain  
 
Weak hits:
ENSPTRP00000002849   0.0235   1728-1758   Notch domain  
ENSPTRP00000036386   0.0471   1556-1585   Notch domain  

Gorilla gorilla 69_3.1 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000002300   0.000000196   1253-1284   Notch domain  
  0.0000112   1216-1246   Notch domain  
  0.00314   1175-1204   Notch domain  
ENSGGOP00000009581   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSGGOP00000009720   0.000000068   540-573   Notch domain  
  0.00000011   580-612   Notch domain  
  0.00000111   499-531   Notch domain  
ENSGGOP00000016493   0.000000101   1396-1428   Notch domain  
  0.000000314   1475-1506   Notch domain  
  0.00131   1438-1469   Notch domain  
ENSGGOP00000021817   0.0000000785   1427-1460   Notch domain  
  0.00000112   1346-1377   Notch domain  
  0.00000209   1386-1418   Notch domain  
 
Weak hits:
ENSGGOP00000002618   0.0235   1730-1760   Notch domain  
ENSGGOP00000006962   0.0432   1440-1469   Notch domain  

Pongo abelii 69_2 has 6 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000005567   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSPPYP00000010835   0.0000000798   1467-1500   Notch domain  
  0.00000101   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
ENSPPYP00000018437   0.000000196   1251-1282   Notch domain  
  0.0000112   1214-1244   Notch domain  
  0.00183   1173-1202   Notch domain  
 
Weak hits:
ENSPPYP00000000552   0.0235   1728-1758   Notch domain  

Nomascus leucogenys 69_1.0 has 8 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000006645   0.000000101   1414-1446   Notch domain  
  0.000000314   1493-1524   Notch domain  
  0.00131   1456-1487   Notch domain  
ENSNLEP00000007730   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSNLEP00000008103   0.0000112   1210-1240   Notch domain  
  0.0000392   1247-1277   Notch domain  
  0.00314   1169-1198   Notch domain  
ENSNLEP00000010158   0.000000115   1465-1498   Notch domain  
  0.000000183   1505-1537   Notch domain  
  0.00000196   1424-1456   Notch domain  
 
Weak hits:
ENSNLEP00000018784   0.00314   1729-1758   Notch domain  

Macaca mulatta 69_1 has 9 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000012104   0.000000116   1489-1522   Notch domain  
  0.00000196   1448-1480   Notch domain  
  0.000131   1529-1560   Notch domain  
ENSMMUP00000016491   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSMMUP00000016684   0.000000102   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.00131   1466-1497   Notch domain  
ENSMMUP00000017928   0.0000000759   1360-1393   Notch domain  
  0.000000955   1279-1311   Notch domain  
  0.00000196   1319-1351   Notch domain  
ENSMMUP00000024287   0.0000112   1215-1245   Notch domain  
  0.00314   1174-1203   Notch domain  
 
Weak hits:
ENSMMUP00000017206   0.0445   1471-1500   Notch domain  

Callithrix jacchus 69_3.2.1 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000002933   0.0000693   445-469   Notch domain  
  0.00497   508-535   Notch domain  
ENSCJAP00000003202   0.000000262   1251-1282   Notch domain  
  0.0000112   1214-1244   Notch domain  
  0.00314   1173-1202   Notch domain  
ENSCJAP00000003872   0.0000000798   1464-1497   Notch domain  
  0.00000101   1383-1415   Notch domain  
  0.00000209   1423-1455   Notch domain  
ENSCJAP00000020179   0.000000144   1480-1513   Notch domain  
  0.000000183   1520-1552   Notch domain  
  0.00000549   1439-1471   Notch domain  
ENSCJAP00000037056   0.0000000418   1382-1412   Notch domain  
  0.0000000889   1295-1327   Notch domain  

Otolemur garnettii 69_3 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000005979   0.0000000798   1467-1500   Notch domain  
  0.000000981   1386-1418   Notch domain  
  0.00000209   1426-1458   Notch domain  
ENSOGAP00000009118   0.00000017   1253-1284   Notch domain  
  0.00000915   1216-1246   Notch domain  
  0.0102   1175-1204   Notch domain  
ENSOGAP00000011267   0.0000902   444-467   Notch domain  
  0.0068   507-534   Notch domain  
ENSOGAP00000013501   0.0000000994   1385-1417   Notch domain  
  0.000000314   1464-1495   Notch domain  
  0.00131   1427-1458   Notch domain  
ENSOGAP00000014252   0.000000183   1529-1561   Notch domain  
  0.00000034   1489-1522   Notch domain  
  0.000000981   1448-1480   Notch domain  

Microcebus murinus 69_1 has 5 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001681   0.000000144   1250-1281   Notch domain  
  0.00000301   1213-1243   Notch domain  
  0.00615   1172-1201   Notch domain  
ENSMICP00000010978   0.0000667   401-425   Notch domain  
  0.00863   465-492   Notch domain  
ENSMICP00000015310   0.0000000863   1131-1163   Notch domain  
  0.000000275   1210-1241   Notch domain  
  0.00115   1173-1204   Notch domain  
 
Weak hits:
ENSMICP00000003936   0.0418   1415-1444   Notch domain  
ENSMICP00000005458   0.0235   1726-1756   Notch domain  

Rattus norvegicus 69_3.4 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000000513   0.000000248   1249-1280   Notch domain  
  0.00000523   1211-1242   Notch domain  
  0.0157   1172-1200   Notch domain  
ENSRNOP00000006980   0.000068   445-469   Notch domain  
  0.00445   508-535   Notch domain  
ENSRNOP00000019138   0.000000115   1469-1502   Notch domain  
  0.000000183   1509-1541   Notch domain  
  0.00000105   1428-1460   Notch domain  
ENSRNOP00000037570   0.0000000693   1469-1502   Notch domain  
  0.00000222   1388-1420   Notch domain  
  0.00000248   1428-1460   Notch domain  
ENSRNOP00000046610   0.0000000955   1424-1456   Notch domain  
  0.000000222   1503-1534   Notch domain  
  0.000641   1465-1497   Notch domain  
 
Weak hits:
ENSRNOP00000043354   0.034   1579-1609   Notch domain  

Mus musculus 69_38 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000015612   0.000000131   1249-1280   Notch domain  
  0.00000523   1211-1242   Notch domain  
  0.00994   1172-1200   Notch domain  
ENSMUSP00000028288   0.000000115   1489-1522   Notch domain  
  0.000000183   1529-1561   Notch domain  
  0.00000301   1448-1480   Notch domain  
ENSMUSP00000078741   0.00000017   1424-1456   Notch domain  
  0.000000314   1503-1534   Notch domain  
  0.000327   1465-1497   Notch domain  
ENSMUSP00000085016   0.0000000798   1468-1501   Notch domain  
  0.00000157   1387-1419   Notch domain  
  0.00000248   1427-1459   Notch domain  
ENSMUSP00000120643   0.000068   445-469   Notch domain  
  0.00445   508-535   Notch domain  

Dipodomys ordii 69_1 has 6 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000001096   0.000000248   1449-1479   Notch domain  
ENSDORP00000009340   0.000000131   910-941   Notch domain  
  0.00000706   872-903   Notch domain  
  0.00327   832-861   Notch domain  
ENSDORP00000013528   0.0000000693   1347-1380   Notch domain  
  0.000000418   1266-1298   Notch domain  
  0.00000131   1306-1338   Notch domain  
 
Weak hits:
ENSDORP00000014582   0.00235   586-609   Notch domain  
  0.0432   1718-1747   Notch domain  

Ictidomys tridecemlineatus 69_2 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000001657   0.0000889   445-468   Notch domain  
  0.00484   508-535   Notch domain  
ENSSTOP00000003054   0.0000000798   1468-1501   Notch domain  
  0.000000745   1387-1419   Notch domain  
  0.00000209   1427-1459   Notch domain  
ENSSTOP00000004190   0.000000115   1365-1397   Notch domain  
  0.000000314   1444-1475   Notch domain  
  0.00131   1407-1438   Notch domain  
ENSSTOP00000005319   0.000000116   1483-1516   Notch domain  
  0.000000183   1523-1555   Notch domain  
  0.00000327   1442-1474   Notch domain  
ENSSTOP00000017372   0.00000017   1253-1284   Notch domain  
  0.000011   1216-1246   Notch domain  
  0.00235   1175-1204   Notch domain  

Cavia porcellus 69_3 has 11 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000520   0.000000589   1232-1264   Notch domain  
  0.00000248   1195-1226   Notch domain  
  0.0107   1155-1183   Notch domain  
ENSCPOP00000011665   0.000000183   1529-1561   Notch domain  
  0.000000196   1489-1522   Notch domain  
  0.00000196   1448-1480   Notch domain  
ENSCPOP00000014192   0.000000288   1400-1432   Notch domain  
  0.000000314   1479-1510   Notch domain  
  0.00131   1442-1473   Notch domain  
ENSCPOP00000016148   0.0000000785   1467-1500   Notch domain  
  0.00000112   1388-1420   Notch domain  
  0.00000209   1428-1460   Notch domain  
ENSCPOP00000018955   0.0000889   445-468   Notch domain  
  0.00288   511-535   Notch domain  

Oryctolagus cuniculus 69_2 has 7 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000014251   0.000000101   1400-1432   Notch domain  
  0.000000314   1479-1510   Notch domain  
  0.00131   1442-1473   Notch domain  
ENSOCUP00000020956   0.000000301   1473-1504   Notch domain  
  0.0000116   1436-1466   Notch domain  
  0.00562   1395-1424   Notch domain  
ENSOCUP00000024440   0.0000000915   1427-1458   Notch domain  
  0.00000183   1386-1418   Notch domain  
  0.0000112   1354-1378   Notch domain  
 
Weak hits:
ENSOCUP00000025431   0.017   1431-1461   Notch domain  

Ochotona princeps 69 has 10 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000001098   0.0000667   400-424   Notch domain  
  0.00471   463-490   Notch domain  
ENSOPRP00000001200   0.00000034   1254-1285   Notch domain  
  0.0000112   1217-1247   Notch domain  
  0.00589   1176-1205   Notch domain  
ENSOPRP00000006589   0.000000101   1398-1430   Notch domain  
  0.000000314   1477-1508   Notch domain  
  0.00131   1440-1471   Notch domain  
ENSOPRP00000010547   0.0000000994   1323-1355   Notch domain  
  0.000000115   1283-1316   Notch domain  
  0.00000248   1242-1274   Notch domain  
ENSOPRP00000013658   0.00000051   1347-1379   Notch domain  
  0.000000693   1430-1460   Notch domain  
  0.00994   1387-1413   Notch domain  

First Previous   1 2 3 4 5 6 7 8 9   Next Last
Showing genomes 151 to 175 of 218

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Notch domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   10160 10160
No Yes Homo sapiens 76_38 Human 24 12
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 9 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 21 10
No Yes Pongo abelii 76_2 Sumatran orangutan 6 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 13 6
No Yes Papio anubis 76 Olive baboon 11 5
No Yes Macaca mulatta 76_1 Rhesus monkey 16 8
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 21 10
No Yes Otolemur garnettii 76_3 Small-eared galago 11 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 76_5.0 Norway rat 12 6
No Yes Mus musculus 76_38 House mouse 11 5
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 6 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 11 5
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 11 5
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 8 4
No Yes Ochotona princeps 76 American pika 10 5
No Yes Tupaia belangeri 76 Northern tree shrew 5 3
No Yes Sus scrofa 76_10.2 Pig 8 5
No Yes Bos taurus 76_3.1 Cattle 11 5
No Yes Ovis aries 76_3.1 Sheep 7 4
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 11 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 10 5
No Yes Canis familiaris 76_3.1 Dog 19 9
No Yes Felis catus 76_6.2 Domestic cat 9 5
No Yes Equus caballus 76_2 Horse 16 8
No Yes Myotis lucifugus 76_2.0 Little brown bat 5 3
No Yes Pteropus vampyrus 76_1 Large flying fox 11 5
No Yes Sorex araneus 76_1 European shrew 5 3
No Yes Erinaceus europaeus 76 Western European hedgehog 4 3
No Yes Procavia capensis 76_1 Cape rock hyrax 8 3
No Yes Loxodonta africana 76_3 African savanna elephant 12 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 3
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 11 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 12 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 11 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 4
No Yes Saccoglossus kowalevskii v3.0   6 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 1
No Yes Meleagris gallopavo 76_2 Turkey 6 3
No Yes Gallus gallus 76_4 Chicken 6 3
No Yes Anas platyrhynchos 76_1.0 Mallard 6 3
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 4
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 6 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 5 3
No Yes Anolis carolinensis 76_2.0 Green anole 8 4
No Yes Xenopus laevis African clawed frog 9 3
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 16 9
No Yes Latimeria chalumnae 76_1 Coelacanth 16 6
No Yes Lepisosteus oculatus 76 Spotted gar 12 4
No Yes Gadus morhua 76_1 Atlantic cod 31 12
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 27 10
No Yes Takifugu rubripes 76_4 Torafugu 68 24
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 15 6
No Yes Oryzias latipes 76_1 Japanese medaka 13 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 15 6
No Yes Poecilia formosa 76 Amazon molly 17 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 21 8
No Yes Astyanax mexicanus 76 Mexican tetra 14 6
No Yes Danio rerio 76_9 Zebrafish 24 10
No Yes Oikopleura dioica   2 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 25 10
No Yes Ciona intestinalis 76 Vase tunicate 3 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 2
No Yes Adineta vaga   2 1
No Yes Octopus bimaculoides 280   4 2
No Yes Crassostrea gigas 22 Pacific oyster 5 3
No Yes Lottia gigantea Owl limpet 2 1
No Yes Helobdella robusta   5 3
No Yes Capitella sp. I   6 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 1
No Yes Heliconius melpomene Postman butterfly 3 1
No Yes Bombyx mori Domestic silkworm 2 1
No Yes Nasonia vitripennis Jewel wasp 3 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 15 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 3 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 4 2
No Yes Atta cephalotes v1.1   4 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   3 1
No Yes Drosophila willistoni 1.3   4 2
No Yes Drosophila pseudoobscura 2.13   3 1
No Yes Drosophila persimilis 1.3   3 1
No Yes Drosophila suzukii   3 1
No Yes Drosophila yakuba 1.3   3 1
No Yes Drosophila sechellia 1.3   3 1
No Yes Drosophila melanogaster 76_5 Fruit fly 7 3
No Yes Drosophila erecta 1.3   3 1
No Yes Drosophila ananassae 1.3   3 1
No Yes Drosophila virilis 1.2   3 1
No Yes Drosophila mojavensis 1.3   3 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 3 1
No Yes Anopheles darlingi 22 American malaria mosquito 3 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 1
No Yes Tribolium castaneum 3.0 Red flour beetle 3 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 2
No Yes Acyrthosiphon pisum Pea aphid 3 1
No Yes Rhodnius prolixus 22   3 1
No Yes Daphnia pulex Common water flea 6 2
No Yes Strigamia maritima 22   3 1
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 4 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 4 2
No Yes Pristionchus pacificus   12 8
No Yes Meloidogyne incognita Southern root-knot nematode 3 1
No Yes Onchocerca volvulus 22   7 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 17 6
No Yes Caenorhabditis japonica   3 1
No Yes Caenorhabditis brenneri   8 3
No Yes Caenorhabditis remanei   6 2
No Yes Caenorhabditis elegans 76_235 Roundworm 6 2
No Yes Caenorhabditis briggsae 2   12 4
No Yes Trichinella spiralis 22   3 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   4 2
No Yes Echinococcus granulosus   4 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   3 2
No Yes Mnemiopsis leidyi Sea walnut 2 1
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   3 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 1
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   2 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Sphaeroforma arctica JP610   3 3
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium muris   1 1
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Neospora caninum   3 1
No Yes Toxoplasma gondii VEG   3 1
No Yes Toxoplasma gondii ME49   3 1
No Yes Toxoplasma gondii GT1   3 1
No Yes Emiliania huxleyi CCMP1516   8 6
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 14 7
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 2
No Yes Neospora caninum Nc-Liverpool 6.2   3 1
No Yes Homo sapiens 75_37 (old version GRC) Human 24 12
No Yes Homo sapiens (NCBI version) Human 11 5
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 11 5
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 7 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 8 3
No Yes Homo sapiens 69_37 Human 25 12
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 9 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 5
No Yes Pongo abelii 69_2 Sumatran orangutan 6 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 8 4
No Yes Macaca mulatta 69_1 Rhesus monkey 9 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 11 5
No Yes Otolemur garnettii 69_3 Small-eared galago 11 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 3
No Yes Rattus norvegicus 69_3.4 Norway rat 11 5
No Yes Mus musculus 69_38 House mouse 11 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 6 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 11 5
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 7 3
No Yes Ochotona princeps 69 American pika 10 5
No Yes Tupaia belangeri 69 Northern tree shrew 5 3
No Yes Sus scrofa 69_10.2 Pig 5 3
No Yes Bos taurus 69_3.1 Cattle 11 5
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 11 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 10 5
No Yes Canis familiaris 69_3.1 Dog 11 5
No Yes Felis catus 69 Domestic cat 6 4
No Yes Equus caballus 69_2 Horse 8 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 5 3
No Yes Pteropus vampyrus 69_1 Large flying fox 11 5
No Yes Sorex araneus 69_1 European shrew 5 3
No Yes Erinaceus europaeus 69 Western European hedgehog 4 3
No Yes Procavia capensis 69_1 Cape rock hyrax 8 3
No Yes Loxodonta africana 69_3 African savanna elephant 6 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 11 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 8 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 11 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 9 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 1
No Yes Meleagris gallopavo 69_2 Turkey 6 3
No Yes Gallus gallus 69_2 Chicken 6 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 4
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 5 3
No Yes Anolis carolinensis 69_2.0 Green anole 8 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 10 5
No Yes Latimeria chalumnae 69_1 Coelacanth 13 5
No Yes Gadus morhua 69_1 Atlantic cod 13 6
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 15 6
No Yes Takifugu rubripes 69_4 Torafugu 13 5
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 15 6
No Yes Oryzias latipes 69_1 Japanese medaka 13 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 15 6
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 15 6
No Yes Danio rerio 69_9 Zebrafish 15 6
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 1
No Yes Ciona intestinalis 69 Vase tunicate 3 1
No Yes Drosophila melanogaster 69_5 Fruit fly 4 2
No Yes Caenorhabditis elegans 69_215 Roundworm 6 2
No Yes NCBI 2017_08 genome   3791 1763
No Yes Protozoadb 2010_08 (Protozoadb)   11 7
No Yes STRING v9.0.5 (STRING)   349 155
No Yes Uniprot 2018_03 genome   3287 1477
No Yes Global Ocean Sampling Expedition (GOS)   7 6
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   40 14
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   41 41
No Yes TargetDB (Targets)   11 5

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]