SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

GntR ligand-binding domain-like superfamily assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Thermobaculum terrenum ATCC BAA-798


gi|269839030|ref|YP_003323722.1|

gi|269926219|ref|YP_003322842.1|

gi|269839000|ref|YP_003323692.1|

gi|269839343|ref|YP_003324035.1|


Synechococcus sp. PCC 7502


gi|428221242|ref|YP_007105412.1|


Microcoleus sp. PCC 7113


gi|428314087|ref|YP_007125064.1|


Geitlerinema sp. PCC 7407


gi|428225812|ref|YP_007109909.1|


Gloeocapsa sp. PCC 7428


gi|434394896|ref|YP_007129843.1|

gi|434392060|ref|YP_007127007.1|

gi|434393775|ref|YP_007128722.1|

gi|434393376|ref|YP_007128323.1|


Nostoc sp. PCC 7107


gi|427709835|ref|YP_007052212.1|


Nostoc punctiforme PCC 73102


gi|186684207|ref|YP_001867403.1|


Conexibacter woesei DSM 14684


gi|284045589|ref|YP_003395929.1|

gi|284045081|ref|YP_003395421.1|

gi|284042927|ref|YP_003393267.1|

gi|284045497|ref|YP_003395837.1|

gi|284042414|ref|YP_003392754.1|

gi|284041816|ref|YP_003392156.1|

gi|284043957|ref|YP_003394297.1|

gi|284043559|ref|YP_003393899.1|

gi|284046235|ref|YP_003396575.1|

gi|284045343|ref|YP_003395683.1|

gi|284042408|ref|YP_003392748.1|

gi|284041580|ref|YP_003391920.1|

gi|284046492|ref|YP_003396832.1|

gi|284045746|ref|YP_003396086.1|

gi|284042780|ref|YP_003393120.1|

gi|284043876|ref|YP_003394216.1|

gi|284045815|ref|YP_003396155.1|

gi|284045861|ref|YP_003396201.1|

gi|284044222|ref|YP_003394562.1|

gi|284047148|ref|YP_003397488.1|

gi|284042629|ref|YP_003392969.1|

gi|284043484|ref|YP_003393824.1|

gi|284042456|ref|YP_003392796.1|

gi|284041865|ref|YP_003392205.1|

gi|284043766|ref|YP_003394106.1|

gi|284047051|ref|YP_003397391.1|

gi|284044188|ref|YP_003394528.1|

gi|284042873|ref|YP_003393213.1|

gi|284042102|ref|YP_003392442.1|

gi|284042096|ref|YP_003392436.1|

gi|284044790|ref|YP_003395130.1|

gi|284046519|ref|YP_003396859.1|

gi|284045771|ref|YP_003396111.1|

gi|284045536|ref|YP_003395876.1|

gi|284044219|ref|YP_003394559.1|

gi|284045538|ref|YP_003395878.1|

gi|284043663|ref|YP_003394003.1|

gi|284045858|ref|YP_003396198.1|

gi|284045763|ref|YP_003396103.1|

gi|284045417|ref|YP_003395757.1|

gi|284043992|ref|YP_003394332.1|

gi|284044509|ref|YP_003394849.1|

gi|284042660|ref|YP_003393000.1|

gi|284041748|ref|YP_003392088.1|


Eggerthella lenta DSM 2243


gi|257792632|ref|YP_003183238.1|


Coriobacterium glomerans PW2


gi|328955153|ref|YP_004372486.1|

gi|328954921|ref|YP_004372254.1|


Rubrobacter xylanophilus DSM 9941


gi|108803061|ref|YP_642998.1|

gi|108803403|ref|YP_643340.1|

gi|108805789|ref|YP_645726.1|

gi|108803388|ref|YP_643325.1|

gi|108805914|ref|YP_645851.1|

gi|108803086|ref|YP_643023.1|

gi|108803092|ref|YP_643029.1|

gi|108805381|ref|YP_645318.1|

gi|108803376|ref|YP_643313.1|

gi|108805065|ref|YP_645002.1|

gi|108804535|ref|YP_644472.1|

gi|108804701|ref|YP_644638.1|

gi|108804682|ref|YP_644619.1|

gi|108805825|ref|YP_645762.1|

gi|108803771|ref|YP_643708.1|

gi|108803869|ref|YP_643806.1|

gi|108804687|ref|YP_644624.1|


Ilumatobacter coccineus


gi|470177908|ref|YP_007563952.1|

gi|470180168|ref|YP_007566212.1|

gi|470180437|ref|YP_007566481.1|


Acidimicrobium ferrooxidans DSM 10331


gi|256372101|ref|YP_003109925.1|

gi|256371034|ref|YP_003108858.1|


Thermobispora bispora DSM 43833


gi|296270133|ref|YP_003652765.1|

gi|296271492|ref|YP_003654124.1|

gi|296268303|ref|YP_003650935.1|

gi|296269707|ref|YP_003652339.1|


Nakamurella multipartita DSM 44233


gi|258653511|ref|YP_003202667.1|

gi|258651534|ref|YP_003200690.1|

gi|258653529|ref|YP_003202685.1|

gi|258652035|ref|YP_003201191.1|

gi|258653106|ref|YP_003202262.1|

gi|258654908|ref|YP_003204064.1|

gi|258655323|ref|YP_003204479.1|

gi|258653116|ref|YP_003202272.1|

gi|258654895|ref|YP_003204051.1|

gi|258652421|ref|YP_003201577.1|

gi|258650490|ref|YP_003199646.1|

gi|258652241|ref|YP_003201397.1|


Acidothermus cellulolyticus 11B


gi|117929059|ref|YP_873610.1|


Modestobacter marinus


gi|389864071|ref|YP_006366311.1|

gi|389864036|ref|YP_006366276.1|

gi|389864031|ref|YP_006366271.1|

gi|389865688|ref|YP_006367929.1|

gi|389864504|ref|YP_006366744.1|

gi|389863778|ref|YP_006366018.1|

gi|389861841|ref|YP_006364080.1|


Blastococcus saxobsidens DD2


gi|379737758|ref|YP_005331264.1|

gi|379734878|ref|YP_005328384.1|

gi|379736756|ref|YP_005330262.1|

gi|379736794|ref|YP_005330300.1|

gi|379736005|ref|YP_005329511.1|

gi|379736971|ref|YP_005330477.1|

gi|379736908|ref|YP_005330414.1|

gi|379736762|ref|YP_005330268.1|

gi|379735093|ref|YP_005328599.1|


Geodermatophilus obscurus DSM 43160


gi|284991278|ref|YP_003409832.1|

gi|284992187|ref|YP_003410741.1|

gi|284990244|ref|YP_003408798.1|

gi|284991319|ref|YP_003409873.1|

gi|284992024|ref|YP_003410578.1|

gi|284991295|ref|YP_003409849.1|

gi|284989854|ref|YP_003408408.1|

gi|284991290|ref|YP_003409844.1|


Kineococcus radiotolerans SRS30216


gi|152968338|ref|YP_001364122.1|

gi|152966446|ref|YP_001362230.1|

gi|152965887|ref|YP_001361671.1|

gi|152964121|ref|YP_001359905.1|

gi|152967586|ref|YP_001363370.1|

gi|152968140|ref|YP_001363924.1|

gi|152964506|ref|YP_001360290.1|

gi|152966109|ref|YP_001361893.1|

gi|152968154|ref|YP_001363938.1|

gi|152966633|ref|YP_001362417.1|

gi|152965490|ref|YP_001361274.1|

gi|152968168|ref|YP_001363952.1|

gi|152964156|ref|YP_001359940.1|

gi|152967836|ref|YP_001363620.1|

gi|152964077|ref|YP_001359861.1|

gi|152965599|ref|YP_001361383.1|

gi|152966091|ref|YP_001361875.1|

gi|152964520|ref|YP_001360304.1|


Catenulispora acidiphila DSM 44928


gi|256395049|ref|YP_003116613.1|

gi|256390653|ref|YP_003112217.1|

gi|256397562|ref|YP_003119126.1|

gi|256393084|ref|YP_003114648.1|

gi|256394149|ref|YP_003115713.1|

gi|256394057|ref|YP_003115621.1|

gi|256395578|ref|YP_003117142.1|

gi|256391536|ref|YP_003113100.1|

gi|256393482|ref|YP_003115046.1|

gi|256394093|ref|YP_003115657.1|

gi|256394066|ref|YP_003115630.1|

gi|256393356|ref|YP_003114920.1|

gi|256389923|ref|YP_003111487.1|

gi|256395945|ref|YP_003117509.1|

gi|256390958|ref|YP_003112522.1|

gi|256391233|ref|YP_003112797.1|

gi|256392480|ref|YP_003114044.1|

gi|256397506|ref|YP_003119070.1|

gi|256396558|ref|YP_003118122.1|


Stackebrandtia nassauensis DSM 44728


gi|291297750|ref|YP_003509028.1|

gi|291299424|ref|YP_003510702.1|

gi|291299067|ref|YP_003510345.1|

gi|291302670|ref|YP_003513948.1|

gi|291303784|ref|YP_003515062.1|

gi|291299137|ref|YP_003510415.1|

gi|291303541|ref|YP_003514819.1|

gi|291303070|ref|YP_003514348.1|

gi|291299222|ref|YP_003510500.1|

gi|291297583|ref|YP_003508861.1|

gi|291303096|ref|YP_003514374.1|

gi|291302060|ref|YP_003513338.1|

gi|291302747|ref|YP_003514025.1|

gi|291300219|ref|YP_003511497.1|


Frankia symbiont of Datisca glomerata


gi|336177602|ref|YP_004582977.1|

gi|336177980|ref|YP_004583355.1|

gi|336177591|ref|YP_004582966.1|

gi|336178000|ref|YP_004583375.1|

gi|336176508|ref|YP_004581883.1|

gi|336178848|ref|YP_004584223.1|


Frankia sp. EAN1pec


gi|158313829|ref|YP_001506337.1|

gi|158315506|ref|YP_001508014.1|

gi|158312534|ref|YP_001505042.1|

gi|158315293|ref|YP_001507801.1|

gi|158316326|ref|YP_001508834.1|

gi|158316544|ref|YP_001509052.1|

gi|158316465|ref|YP_001508973.1|

gi|158313512|ref|YP_001506020.1|

gi|158314121|ref|YP_001506629.1|

gi|158313522|ref|YP_001506030.1|

gi|158316371|ref|YP_001508879.1|

gi|158318583|ref|YP_001511091.1|

gi|158315721|ref|YP_001508229.1|

gi|158316541|ref|YP_001509049.1|

gi|158313524|ref|YP_001506032.1|

gi|158313402|ref|YP_001505910.1|


Frankia alni ACN14a


gi|111225516|ref|YP_716310.1|

gi|111225744|ref|YP_716538.1|

gi|111219869|ref|YP_710663.1|

gi|111222543|ref|YP_713337.1|

gi|111222945|ref|YP_713739.1|

gi|111222879|ref|YP_713673.1|

gi|111222876|ref|YP_713670.1|

gi|111219675|ref|YP_710469.1|

gi|111224241|ref|YP_715035.1|

gi|111223387|ref|YP_714181.1|

gi|111223890|ref|YP_714684.1|

gi|111224630|ref|YP_715424.1|

gi|111224304|ref|YP_715098.1|

gi|111222249|ref|YP_713043.1|

gi|111224265|ref|YP_715059.1|