SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

His-Me finger endonucleases superfamily assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Cellulophaga lytica DSM 7489


gi|325285694|ref|YP_004261484.1|

gi|325285994|ref|YP_004261784.1|

gi|325285062|ref|YP_004260852.1|


Flavobacteriaceae bacterium 3519-10


gi|255535786|ref|YP_003096157.1|

gi|255535785|ref|YP_003096156.1|

gi|255535006|ref|YP_003095377.1|

gi|255535293|ref|YP_003095664.1|


Polaribacter sp. MED152


gi|472321188|ref|YP_007670711.1|

gi|472321187|ref|YP_007670710.1|

gi|472320841|ref|YP_007670366.1|


Riemerella anatipestifer ATCC 11845 = DSM 15868


gi|313206042|ref|YP_004045219.1|

gi|313206775|ref|YP_004045952.1|


Ornithobacterium rhinotracheale DSM 15997


gi|392390001|ref|YP_006426604.1|


Capnocytophaga canimorsus Cc5


gi|340622237|ref|YP_004740689.1|


Capnocytophaga ochracea DSM 7271


gi|256820723|ref|YP_003142002.1|


Weeksella virosa DSM 16922


gi|325955533|ref|YP_004239193.1|

gi|325955374|ref|YP_004239034.1|

gi|325954405|ref|YP_004238065.1|


Flavobacterium indicum GPTSA100-9


gi|383449772|ref|YP_005356493.1|

gi|383450765|ref|YP_005357486.1|

gi|383451707|ref|YP_005358428.1|

gi|383450851|ref|YP_005357572.1|


Flavobacterium psychrophilum JIP02/86


gi|150026451|ref|YP_001297277.1|

gi|150024789|ref|YP_001295615.1|

gi|150024814|ref|YP_001295640.1|

gi|150024962|ref|YP_001295788.1|


Flavobacterium branchiophilum FL-15


gi|347535315|ref|YP_004842740.1|

gi|347536261|ref|YP_004843686.1|


Flavobacterium columnare ATCC 49512


gi|365959897|ref|YP_004941464.1|

gi|365959753|ref|YP_004941320.1|

gi|365959256|ref|YP_004940823.1|

gi|365959255|ref|YP_004940822.1|


Flavobacterium johnsoniae UW101


gi|146299191|ref|YP_001193782.1|

gi|146302448|ref|YP_001197039.1|

gi|146302450|ref|YP_001197041.1|

gi|146302402|ref|YP_001196993.1|


Fibrobacter succinogenes subsp. succinogenes S85


gi|261414616|ref|YP_003248299.1|


Candidatus Protochlamydia amoebophila UWE25


gi|46446843|ref|YP_008208.1|

gi|46447559|ref|YP_008924.1|

gi|46447582|ref|YP_008947.1|


Parachlamydia acanthamoebae UV-7


gi|338174724|ref|YP_004651534.1|


Simkania negevensis Z


gi|338733976|ref|YP_004672449.1|

gi|338731762|ref|YP_004662881.1|


Phycisphaera mikurensis NBRC 102666


gi|383766180|ref|YP_005445161.1|


Rhodopirellula baltica SH 1


gi|32473001|ref|NP_865995.1|


Pirellula staleyi DSM 6068


gi|283782209|ref|YP_003372964.1|

gi|283782213|ref|YP_003372968.1|

gi|283782210|ref|YP_003372965.1|


Opitutus terrae PB90-1


gi|182415194|ref|YP_001820260.1|


Turneriella parva DSM 21527


gi|392402670|ref|YP_006439282.1|

gi|392404787|ref|YP_006441399.1|

gi|392402118|ref|YP_006438730.1|

gi|392402117|ref|YP_006438729.1|

gi|392404664|ref|YP_006441276.1|

gi|392401662|ref|YP_006438274.1|


Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'


gi|183221285|ref|YP_001839281.1|


Borrelia garinii PBi


gi|51598666|ref|YP_072854.1|


Borrelia bissettii DN127


gi|343127721|ref|YP_004777652.1|