SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

C-terminal domain of RNA polymerase alpha subunit family assignments to selected genomes

Click on the pictures below to see domain assignment details for that sequence.

The key to the domain colours is at the bottom of the page.




Thermus sp. CCB_US3_UF1


gi|384438889|ref|YP_005653613.1|


Thermus scotoductus SA-01


gi|320451273|ref|YP_004203369.1|


Thermus thermophilus HB27


gi|46199602|ref|YP_005269.1|


Selenomonas sputigena ATCC 35185


gi|330839299|ref|YP_004413879.1|


Selenomonas ruminantium subsp. lactilytica TAM6421


gi|383753542|ref|YP_005432445.1|


Natranaerobius thermophilus JW/NM-WN-LF


gi|188584865|ref|YP_001916410.1|


Symbiobacterium thermophilum IAM 14863


gi|51894182|ref|YP_076873.1|


Clostridium clariflavum DSM 19732


gi|374298047|ref|YP_005048238.1|


Eubacterium siraeum


gi|479145742|ref|YP_007776605.1|


Clostridium cellulolyticum H10


gi|220928236|ref|YP_002505145.1|


Clostridium thermocellum ATCC 27405


gi|125975413|ref|YP_001039323.1|


Ethanoligenens harbinense YUAN-3


gi|317131398|ref|YP_004090712.1|


Faecalibacterium prausnitzii


gi|479171700|ref|YP_007799887.1|


Ruminococcus bromii


gi|479150770|ref|YP_007780946.1|


Ruminococcus albus 7


gi|317054795|ref|YP_004103262.1|


Thermaerobacter marianensis DSM 12885


gi|317123070|ref|YP_004103073.1|


Sulfobacillus acidophilus DSM 10332


gi|379006105|ref|YP_005255556.1|


Oscillibacter valericigenes Sjm18-20


gi|350269397|ref|YP_004880705.1|


Candidatus Desulforudis audaxviator MP104C


gi|169830464|ref|YP_001716446.1|


Thermincola potens JR


gi|296131864|ref|YP_003639111.1|


Pelotomaculum thermopropionicum SI


gi|147676684|ref|YP_001210899.1|


Desulfosporosinus acidiphilus SJ4


gi|392423922|ref|YP_006464916.1|


Desulfosporosinus orientis DSM 765


gi|374993007|ref|YP_004968506.1|


Dehalobacter sp. DCA


gi|410658501|ref|YP_006910872.1|


Dehalobacter sp. CF


gi|410661488|ref|YP_006913859.1|