SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

L27 domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the L27 domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050166 67 2008-09-10 d1vf6a_ L27 domain
0051594 280 2008-09-10 d1zl8b1 L27 domain
0043366 83 2005-09-08 d1rsoa_ L27 domain
0051219 67 2008-09-10 d1y76a1 L27 domain
0044732 9 2005-09-08 d1vf6c_ L27 domain
0051593 63 2008-09-10 d1zl8a1 L27 domain
0051218 63 2008-09-10 d1y74a1 L27 domain
0043367 9 2005-09-08 d1rsob_ L27 domain
0051220 37 2008-09-10 d1y76b1 L27 domain