SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Aminopeptidase/glucanase lid domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the Aminopeptidase/glucanase lid domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051342 326 2008-09-10 d1yloa1 Aminopeptidase/glucanase lid domain
0044761 109 2005-09-08 d1vhoa1 Aminopeptidase/glucanase lid domain
0052939 521 2008-09-10 d2grea1 Aminopeptidase/glucanase lid domain
0051223 397 2008-09-10 d1y7ea1 Aminopeptidase/glucanase lid domain
0044754 142 2005-09-08 d1vhea1 Aminopeptidase/glucanase lid domain
0052786 557 2008-09-10 d2fvga1 Aminopeptidase/glucanase lid domain
0051171 593 2008-09-10 d1y0ya1 Aminopeptidase/glucanase lid domain