SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

OmpA-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 3 SUPERFAMILY models representing the OmpA-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051776 4029 2008-09-10 d2aizp1 OmpA-like
0043093 934 2005-09-08 d1r1ma_ OmpA-like
0041764 943 2005-09-08 d1oapa_ OmpA-like