SUPERFAMILY 1.75 HMM library and genome assignments server

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Sensory domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Sensory domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048581 504 2008-09-10 d1ojga_ Sensory domain of two-component sensor kinase
0048676 636 2008-09-10 d1p0za_ Sensory domain of two-component sensor kinase
0054475 159 2010-05-31 d2p7ja2 YkuI C-terminal domain-like
0051947 115 2008-09-10 d2basa2 YkuI C-terminal domain-like
0054474 68 2010-05-31 d2p7ja1 YkuI C-terminal domain-like
0054044 38 2010-05-31 d2hjea1 LuxQ-periplasmic domain-like