SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

KA1-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the KA1-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044628 68 2005-09-08 d1v5sa_ Kinase associated domain 1, KA1
0044422 81 2005-09-08 d1ul7a_ Kinase associated domain 1, KA1
0054624 116 2010-05-31 d2qrda1 Ssp2 C-terminal domain-like
0054613 150 2010-05-31 d2qlva1 Ssp2 C-terminal domain-like
0054704 155 2010-05-31 d2v8qa1 Ssp2 C-terminal domain-like