SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Plexin repeat superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the Plexin repeat superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041917 278 2005-09-08 d1olza3 Plexin repeat
0049460 250 2008-09-10 d1ssla_ Plexin repeat
0049403 99 2008-09-10 d1shyb2 Plexin repeat
0053613 220 2010-05-31 d1tyeb3 Plexin repeat