SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

HD-domain/PDEase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the HD-domain/PDEase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049586 524 2008-09-10 d1taza_ PDEase
0048665 467 2008-09-10 d1oyna_ PDEase
0049430 449 2008-09-10 d1so2a_ PDEase
0046668 486 2008-09-10 d1f0ja_ PDEase
0049588 1250 2008-09-10 d1tbfa_ PDEase
0049193 497 2008-09-10 d1rkpa_ PDEase
0053004 519 2008-09-10 d2hd1a1 PDEase
0054806 596 2010-05-31 d3b57a1 HD domain
0051349 715 2008-09-10 d1ynba1 HD domain
0054512 769 2010-05-31 d2pjqa1 HD domain
0053234 874 2008-09-10 d2o6ia1 HD domain
0054941 755 2010-05-31 d3dtoa1 HD domain
0053007 674 2008-09-10 d2heka1 HD domain
0054608 582 2010-05-31 d2qgsa1 HD domain
0051140 1903 2008-09-10 d1xx7a_ HD domain
0054007 475 2010-05-31 d2gz4a1 HD domain
0054937 957 2010-05-31 d3djba1 HD domain
0054539 1859 2010-05-31 d2pq7a1 HD domain
0044798 358 2005-09-08 d1vj7a1 HD domain
0053263 792 2008-09-10 d2paqa1 HD domain
0050288 833 2008-09-10 d1vqra_ modified HD domain
0053047 145 2008-09-10 d2huoa1 MioX-like
0053085 158 2008-09-10 d2ibna1 MioX-like
0049806 326 2008-09-10 d1u6za1 Ppx associated domain