SUPERFAMILY 1.75 HMM library and genome assignments server

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DinB/YfiT-like putative metalloenzymes superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the DinB/YfiT-like putative metalloenzymes superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043405 95 2005-09-08 d1rxqa_ YfiT-like putative metal-dependent hydrolases
0054416 538 2010-05-31 d2ou6a1 DinB-like
0054050 159 2010-05-31 d2hkva1 DinB-like
0052571 164 2008-09-10 d2f22a1 DinB-like
0054452 277 2010-05-31 d2p1aa1 DinB-like
0054407 184 2010-05-31 d2oqma1 Sden0562-like
0054297 163 2010-05-31 d2nsfa1 Maleylpyruvate isomerase-like