SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Surp module (SWAP domain) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Surp module (SWAP domain) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053848 547 2010-05-31 d2dt7b1 Surp module (SWAP domain)
0053637 628 2010-05-31 d1x4oa1 Surp module (SWAP domain)
0053847 632 2010-05-31 d2dt6a1 Surp module (SWAP domain)
0044340 219 2005-09-08 d1ug0a_ Surp module (SWAP domain)
0053638 126 2010-05-31 d1x4pa1 Surp module (SWAP domain)