SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribosomal L27 protein-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Ribosomal L27 protein-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044669 243 2005-09-08 d1v8qa_ Ribosomal L27 protein
0054005 823 2010-05-31 d2gycu1 Ribosomal L27 protein
0054791 821 2010-05-31 d2zjrt1 Ribosomal L27 protein
0054280 222 2010-05-31 d2nn6h2 ECR1 N-terminal domain-like
0054277 51 2010-05-31 d2nn6g2 ECR1 N-terminal domain-like
0053735 216 2010-05-31 d2ba0a2 ECR1 N-terminal domain-like
0054283 177 2010-05-31 d2nn6i2 ECR1 N-terminal domain-like
0054213 75 2010-05-31 d2je6i2 ECR1 N-terminal domain-like