SUPERFAMILY 1.75 HMM library and genome assignments server

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AN1-like Zinc finger superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the AN1-like Zinc finger superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050501 147 2008-09-10 d1wfpa_ AN1-like Zinc finger
0050491 153 2008-09-10 d1wffa_ AN1-like Zinc finger
0050497 147 2008-09-10 d1wfla_ AN1-like Zinc finger
0050490 507 2008-09-10 d1wfea_ AN1-like Zinc finger
0050513 336 2008-09-10 d1wg2a_ AN1-like Zinc finger
0050493 653 2008-09-10 d1wfha_ AN1-like Zinc finger