SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PHP14-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 3 SUPERFAMILY models representing the PHP14-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053050 105 2008-09-10 d2hw4a1 Janus/Ocnus
0053238 1221 2008-09-10 d2o8ra2 PPK middle domain-like
0050931 1213 2008-09-10 d1xdpa2 PPK middle domain-like