SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

L28p-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the L28p-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054792 273 2010-05-31 d2zjru1 Ribosomal protein L28
0054602 760 2010-05-31 d2qamz1 Ribosomal protein L28
0053139 410 2008-09-10 d2j0111 Ribosomal protein L28
0054247 732 2010-05-31 d2jz6a1 Ribosomal protein L28
0050310 866 2008-09-10 d1vs6z1 Ribosomal protein L31p
0054171 871 2010-05-31 d2j0141 Ribosomal protein L31p