SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

HIT/MYND zinc finger-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the HIT/MYND zinc finger-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052783 1284 2008-09-10 d2fv6a1 MYND zinc finger
0052447 1368 2008-09-10 d2dj8a1 MYND zinc finger
0052402 1458 2008-09-10 d2d8qa1 MYND zinc finger
0050816 251 2008-09-10 d1x4sa1 HIT zinc finger