SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PriA/YqbF domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the PriA/YqbF domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054047 13 2010-05-31 d2hjqa2 YqbF N-terminal domain-like
0054418 35 2010-05-31 d2outa2 YqbF N-terminal domain-like
0053870 108 2010-05-31 d2e9xb2 PSF2 N-terminal domain-like
0053874 86 2010-05-31 d2e9xd2 SLD5 C-terminal domain-like
0053872 112 2010-05-31 d2e9xc2 PSF3 N-terminal domain-like