SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Chaperone J-domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Chaperone J-domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045028 2487 2005-09-08 d1xbla_ Chaperone J-domain
0037729 1591 2005-09-08 d1fpoa1 Chaperone J-domain
0048279 4921 2008-09-10 d1n4ca_ Chaperone J-domain
0039212 1417 2005-09-08 d1iura_ Chaperone J-domain
0037467 225 2005-09-08 d1fafa_ Chaperone J-domain
0046983 5425 2008-09-10 d1gh6a_ Chaperone J-domain
0038551 2467 2005-09-08 d1hdja_ Chaperone J-domain
0050633 7618 2008-09-10 d1wjza_ Chaperone J-domain