SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Spectrin repeat superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the Spectrin repeat superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047168 316 2008-09-10 d1hcia1 Spectrin repeat
0043004 2118 2005-09-08 d1quua2 Spectrin repeat
0053304 1275 2008-09-10 d2spca_ Spectrin repeat
0049303 1499 2008-09-10 d1s35a1 Spectrin repeat
0046218 1215 2008-09-10 d1cuna2 Spectrin repeat
0043003 1213 2005-09-08 d1quua1 Spectrin repeat
0049794 1106 2008-09-10 d1u5pa1 Spectrin repeat
0048652 9620 2008-09-10 d1owaa_ Spectrin repeat
0046217 1298 2008-09-10 d1cuna1 Spectrin repeat
0038529 327 2005-09-08 d1hcia4 Spectrin repeat
0049304 5365 2008-09-10 d1s35a2 Spectrin repeat