SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Second domain of FERM superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Second domain of FERM superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046535 493 2008-09-10 d1ef1a1 Second domain of FERM
0038036 446 2005-09-08 d1gc7a1 Second domain of FERM
0048168 1485 2008-09-10 d1mixa1 Second domain of FERM
0041398 384 2005-09-08 d1ni2a1 Second domain of FERM
0051790 293 2008-09-10 d2al6a1 Second domain of FERM
0046976 1205 2008-09-10 d1gg3a1 Second domain of FERM
0038416 393 2005-09-08 d1h4ra1 Second domain of FERM
0051180 1218 2008-09-10 d1y19b1 Second domain of FERM