SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

HMG-box superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 16 SUPERFAMILY models representing the HMG-box superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038826 1288 2005-09-08 d1i11a_ HMG-box
0049027 4168 2008-09-10 d1qrva_ HMG-box
0047052 1599 2008-09-10 d1gt0d_ HMG-box
0053586 3296 2010-05-31 d1hsma_ HMG-box
0039979 1182 2005-09-08 d1k99a_ HMG-box
0050522 4260 2008-09-10 d1wgfa_ HMG-box
0035973 1334 2005-09-08 d1cg7a_ HMG-box
0047509 1576 2008-09-10 d1j46a_ HMG-box
0044636 859 2005-09-08 d1v64a_ HMG-box
0053585 3309 2010-05-31 d1hmfa_ HMG-box
0039362 1245 2005-09-08 d1j3xa_ HMG-box
0050064 3383 2008-09-10 d1v63a_ HMG-box
0034978 1243 2005-09-08 d1aaba_ HMG-box
0047504 1665 2008-09-10 d1j3da_ HMG-box
0040422 303 2005-09-08 d1l8ya_ HMG-box
0053174 1400 2008-09-10 d2lefa_ HMG-box