SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

alpha-catenin/vinculin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the alpha-catenin/vinculin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049462 131 2008-09-10 d1st6a3 alpha-catenin/vinculin
0047128 80 2008-09-10 d1h6ga1 alpha-catenin/vinculin
0038436 22 2005-09-08 d1h6ga2 alpha-catenin/vinculin
0049464 50 2008-09-10 d1st6a5 alpha-catenin/vinculin
0049191 183 2008-09-10 d1rkea2 alpha-catenin/vinculin
0046372 236 2008-09-10 d1dowa_ alpha-catenin/vinculin
0049466 157 2008-09-10 d1st6a7 alpha-catenin/vinculin
0049463 45 2008-09-10 d1st6a4 alpha-catenin/vinculin
0048976 98 2008-09-10 d1qkra_ alpha-catenin/vinculin
0043279 33 2005-09-08 d1rkea1 alpha-catenin/vinculin
0049465 205 2008-09-10 d1st6a6 alpha-catenin/vinculin
0051871 59 2008-09-10 d2b0ha1 VBS domain