SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Ferritin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 62 SUPERFAMILY models representing the Ferritin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039557 242 2005-09-08 d1ji4a_ Ferritin
0047582 1231 2008-09-10 d1jgca_ Ferritin
0048355 1845 2008-09-10 d1nfva_ Ferritin
0051154 1039 2008-09-10 d1xz3a1 Ferritin
0052156 1307 2008-09-10 d2ceia1 Ferritin
0035460 329 2005-09-08 d1bcfa_ Ferritin
0048201 924 2008-09-10 d1moja_ Ferritin
0048950 730 2008-09-10 d1qgha_ Ferritin
0050162 724 2008-09-10 d1vela_ Ferritin
0040226 446 2005-09-08 d1krqa_ Ferritin
0048525 728 2008-09-10 d1o9ra_ Ferritin
0051505 312 2008-09-10 d1z6oa1 Ferritin
0052707 851 2008-09-10 d2fjca1 Ferritin
0037194 247 2005-09-08 d1euma_ Ferritin
0043194 417 2005-09-08 d1rcda_ Ferritin
0047502 631 2008-09-10 d1j30a_ Ferritin
0048264 723 2008-09-10 d1n1qa_ Ferritin
0049309 466 2008-09-10 d1s3qa1 Ferritin
0051644 48 2008-09-10 d1zuja1 Ferritin
0046379 109 2008-09-10 d1dpsa_ Ferritin
0049951 779 2008-09-10 d1umna_ Ferritin
0052811 474 2008-09-10 d2fzfa1 Ferritin
0039558 356 2005-09-08 d1ji5a_ Ferritin
0044868 600 2005-09-08 d1vlga_ Ferritin
0047593 852 2008-09-10 d1jiga_ Ferritin
0048397 770 2008-09-10 d1nnqa1 Ferritin
0051415 1066 2008-09-10 d1yv1a1 Ferritin
0036622 371 2005-09-08 d1dvba1 Ferritin
0043064 465 2005-09-08 d1r03a_ Ferritin
0047148 202 2008-09-10 d1h96a_ Ferritin
0050214 753 2008-09-10 d1vjxa_ Ferritin
0051629 36 2008-09-10 d1zs3a1 Ferritin
0040908 460 2005-09-08 d1mfra_ Ferritin
0045957 733 2008-09-10 d1bg7a_ Ferritin
0051506 1344 2008-09-10 d1z6om1 Ferritin
0052712 1365 2008-09-10 d2fkza1 Ferritin
0044579 304 2005-09-08 d1uzra_ Ribonucleotide reductase-like
0049426 533 2008-09-10 d1smsa_ Ribonucleotide reductase-like
0041078 53 2005-09-08 d1mtyb_ Ribonucleotide reductase-like
0047097 557 2008-09-10 d1h0oa_ Ribonucleotide reductase-like
0045770 204 2008-09-10 d1afra_ Ribonucleotide reductase-like
0047609 528 2008-09-10 d1jk0a_ Ribonucleotide reductase-like
0049510 1042 2008-09-10 d1t0qa_ Ribonucleotide reductase-like
0050978 524 2008-09-10 d1xika_ Ribonucleotide reductase-like
0040938 465 2005-09-08 d1mhyd_ Ribonucleotide reductase-like
0048157 207 2008-09-10 d1mhyb_ Ribonucleotide reductase-like
0048645 251 2008-09-10 d1otka_ Ribonucleotide reductase-like
0051533 300 2008-09-10 d1za0a1 Ribonucleotide reductase-like
0049497 564 2008-09-10 d1syya_ Ribonucleotide reductase-like
0048222 974 2008-09-10 d1mtyd_ Ribonucleotide reductase-like
0049090 1163 2008-09-10 d1r2fa_ Ribonucleotide reductase-like
0048625 1257 2008-09-10 d1oquc_ Ribonucleotide reductase-like
0049511 474 2008-09-10 d1t0qb_ Ribonucleotide reductase-like
0052333 288 2008-09-10 d2cwla1 Manganese catalase (T-catalase)
0047612 193 2008-09-10 d1jkva_ Manganese catalase (T-catalase)
0052941 292 2008-09-10 d2gs4a1 YciF-like
0052977 292 2008-09-10 d2gyqa1 YciF-like
0051609 343 2008-09-10 d1zpya1 half-ferritin
0054357 88 2010-05-31 d2oc5a1 PMT1231-like
0054155 207 2010-05-31 d2itba1 MiaE-like
0054372 660 2010-05-31 d2oh3a1 AMB4284-like
0054123 92 2010-05-31 d2ib0a1 Rv2844-like