SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Retrovirus capsid dimerization domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the Retrovirus capsid dimerization domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045255 495 2005-09-08 d2eiaa1 Retrovirus capsid protein C-terminal domain
0036227 449 2005-09-08 d1d1da1 Retrovirus capsid protein C-terminal domain
0042960 470 2005-09-08 d1qrjb1 Retrovirus capsid protein C-terminal domain
0034953 477 2005-09-08 d1a8oa_ Retrovirus capsid protein C-terminal domain
0037110 454 2005-09-08 d1eoqa_ Retrovirus capsid protein C-terminal domain
0052699 1049 2008-09-10 d2fi2a1 SCAN domain
0051231 1048 2008-09-10 d1y7qa1 SCAN domain