SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Bromodomain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Bromodomain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047674 3496 2008-09-10 d1jspb_ Bromodomain
0046608 3400 2008-09-10 d1eqfa1 Bromodomain
0046715 3441 2008-09-10 d1f68a_ Bromodomain
0046469 3538 2008-09-10 d1e6ia_ Bromodomain
0048291 3467 2008-09-10 d1n72a_ Bromodomain
0046609 3485 2008-09-10 d1eqfa2 Bromodomain