SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 13 SUPERFAMILY models representing the Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048296 305 2008-09-10 d1n89a_ Plant lipid-transfer and hydrophobic proteins
0046805 856 2008-09-10 d1fk5a_ Plant lipid-transfer and hydrophobic proteins
0035743 324 2005-09-08 d1bwoa_ Plant lipid-transfer and hydrophobic proteins
0043446 320 2005-09-08 d1rzla_ Plant lipid-transfer and hydrophobic proteins
0040393 282 2005-09-08 d1l6ha_ Plant lipid-transfer and hydrophobic proteins
0048161 1050 2008-09-10 d1mida_ Plant lipid-transfer and hydrophobic proteins
0047269 132 2008-09-10 d1hypa_ Plant lipid-transfer and hydrophobic proteins
0044059 236 2005-09-08 d1tmqb_ Proteinase/alpha-amylase inhibitors
0035496 214 2005-09-08 d1beaa_ Proteinase/alpha-amylase inhibitors
0038707 234 2005-09-08 d1hssa_ Proteinase/alpha-amylase inhibitors
0042396 273 2005-09-08 d1pnb.1 Seed storage protein, 2S albumin
0042457 267 2005-09-08 d1psya_ Seed storage protein, 2S albumin
0043504 234 2005-09-08 d1s6da_ Seed storage protein, 2S albumin