SUPERFAMILY 1.75 HMM library and genome assignments server

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SAM/Pointed domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 24 SUPERFAMILY models representing the SAM/Pointed domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039562 350 2005-09-08 d1ji7a_ Pointed domain
0045998 191 2008-09-10 d1bqva_ Pointed domain
0049479 614 2008-09-10 d1sv0c_ Pointed domain
0043788 242 2005-09-08 d1sxea_ Pointed domain
0049478 505 2008-09-10 d1sv0a_ Pointed domain
0049490 178 2008-09-10 d1sxda_ Pointed domain
0048657 1448 2008-09-10 d1oxja1 SAM (sterile alpha motif) domain
0049975 227 2008-09-10 d1uqva_ SAM (sterile alpha motif) domain
0052591 3025 2008-09-10 d2f3na1 SAM (sterile alpha motif) domain
0049156 63 2008-09-10 d1rg6a_ SAM (sterile alpha motif) domain
0050731 1318 2008-09-10 d1wwva1 SAM (sterile alpha motif) domain
0047895 1860 2008-09-10 d1kw4a_ SAM (sterile alpha motif) domain
0049862 1808 2008-09-10 d1ucva_ SAM (sterile alpha motif) domain
0045878 1991 2008-09-10 d1b4fa_ SAM (sterile alpha motif) domain
0052400 1157 2008-09-10 d2d8ca1 SAM (sterile alpha motif) domain
0042054 485 2005-09-08 d1ow5a_ SAM (sterile alpha motif) domain
0048775 1500 2008-09-10 d1pk3a1 SAM (sterile alpha motif) domain
0050037 903 2008-09-10 d1v38a_ SAM (sterile alpha motif) domain
0046188 153 2008-09-10 d1coka_ SAM (sterile alpha motif) domain
0045861 1983 2008-09-10 d1b0xa_ SAM (sterile alpha motif) domain
0049390 2149 2008-09-10 d1sgga_ SAM (sterile alpha motif) domain
0050795 1468 2008-09-10 d1x40a1 SAM (sterile alpha motif) domain
0054019 74 2010-05-31 d2h80a1 Variant SAM domain
0053830 74 2010-05-31 d2dkya1 Variant SAM domain