SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

RuvA domain 2-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the RuvA domain 2-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035731 254 2005-09-08 d1bvsa2 DNA helicase RuvA subunit, middle domain
0036157 247 2005-09-08 d1cuka2 DNA helicase RuvA subunit, middle domain
0039263 204 2005-09-08 d1ixra1 DNA helicase RuvA subunit, middle domain
0036422 438 2005-09-08 d1dgsa1 NAD+-dependent DNA ligase, domain 3
0047794 1685 2008-09-10 d1kfta_ Excinuclease UvrC C-terminal domain
0052273 4 2008-09-10 d2csba2 Topoisomerase V repeat domain
0052275 496 2008-09-10 d2csba4 Topoisomerase V repeat domain
0052272 4 2008-09-10 d2csba1 Topoisomerase V repeat domain
0052274 4 2008-09-10 d2csba3 Topoisomerase V repeat domain
0051966 2498 2008-09-10 d2bgwa1 Hef domain-like
0050778 2494 2008-09-10 d1x2ia1 Hef domain-like
0051684 1031 2008-09-10 d2a1jb1 Hef domain-like
0051452 636 2008-09-10 d1z00b1 Hef domain-like
0054853 779 2010-05-31 d3bzka2 Tex HhH-containing domain-like
0054852 2088 2010-05-31 d3bzka1 Tex HhH-containing domain-like
0053856 2139 2010-05-31 d2duya1 ComEA-like
0053881 500 2010-05-31 d2edua1 ComEA-like