SUPERFAMILY 1.75 HMM library and genome assignments server

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Rad51 N-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Rad51 N-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043813 320 2005-09-08 d1szpa1 DNA repair protein Rad51, N-terminal domain
0048851 785 2008-09-10 d1pzna1 DNA repair protein Rad51, N-terminal domain
0045865 1124 2008-09-10 d1b22a_ DNA repair protein Rad51, N-terminal domain
0049536 1712 2008-09-10 d1t4ga1 DNA repair protein Rad51, N-terminal domain
0049831 1015 2008-09-10 d1u9la_ NusA extra C-terminal domains
0051237 3 2008-09-10 d1y88a1 Hypothetical protein AF1548, C-terminal domain