SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

HRDC-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the HRDC-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050708 1062 2008-09-10 d1wuda1 HRDC domain from helicases
0046279 239 2008-09-10 d1d8ba_ HRDC domain from helicases
0052492 869 2008-09-10 d2e1fa1 HRDC domain from helicases
0047020 99 2008-09-10 d1go3f_ RNA polymerase II subunit RBP4 (RpoF)
0052106 239 2008-09-10 d2c35a1 RNA polymerase II subunit RBP4 (RpoF)
0051176 148 2008-09-10 d1y14a_ RNA polymerase II subunit RBP4 (RpoF)
0051396 239 2008-09-10 d1yt3a2 RNase D C-terminal domains
0051395 701 2008-09-10 d1yt3a1 RNase D C-terminal domains
0052226 435 2008-09-10 d2cpra1 EXOSC10 HRDC domain-like
0052999 457 2008-09-10 d2hbja1 EXOSC10 HRDC domain-like