SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Saposin superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Saposin superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040726 414 2005-09-08 d1m12a_ NKL-like
0041435 346 2005-09-08 d1nkla_ NKL-like
0040425 231 2005-09-08 d1l9la_ NKL-like
0042723 285 2005-09-08 d1qdma1 Swaposin
0041232 366 2005-09-08 d1n69a_ Saposin B
0041824 363 2005-09-08 d1of9a_ Ameobapore A