SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

DNA-glycosylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the DNA-glycosylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041996 683 2005-09-08 d1orna_ Endonuclease III
0045145 609 2005-09-08 d2abka_ Endonuclease III
0048358 2013 2008-09-10 d1ngna_ Mismatch glycosylase
0043362 641 2005-09-08 d1rrqa1 Mismatch glycosylase
0041094 663 2005-09-08 d1muna_ Mismatch glycosylase
0047788 2921 2008-09-10 d1keaa_ Mismatch glycosylase
0036894 558 2005-09-08 d1ebma1 DNA repair glycosylase, 2 C-terminal domains
0041038 558 2005-09-08 d1mpga1 DNA repair glycosylase, 2 C-terminal domains
0040572 183 2005-09-08 d1lmza_ 3-Methyladenine DNA glycosylase I (Tag)
0042464 463 2005-09-08 d1pu6a_ 3-Methyladenine DNA glycosylase III (MagIII)
0051070 347 2008-09-10 d1xqoa_ AgoG-like
0050956 29 2008-09-10 d1xg7a_ AgoG-like