SUPERFAMILY 1.75 HMM library and genome assignments server

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6-phosphogluconate dehydrogenase C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 26 SUPERFAMILY models representing the 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042306 269 2005-09-08 d1pgja1 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
0050268 1021 2008-09-10 d1vpda1 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
0054910 1928 2010-05-31 d3cuma1 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
0048756 1370 2008-09-10 d1pgpa1 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
0052328 1912 2008-09-10 d2cvza1 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
0048408 401 2008-09-10 d1np3a1 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
0042865 170 2005-09-08 d1qmga1 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
0044957 810 2005-09-08 d1wdka1 HCDH C-domain-like
0045524 896 2005-09-08 d3hdha1 HCDH C-domain-like
0037318 897 2005-09-08 d1f0ya1 HCDH C-domain-like
0044958 649 2005-09-08 d1wdka2 HCDH C-domain-like
0041099 477 2005-09-08 d1mv8a1 UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
0036487 452 2005-09-08 d1dlja1 UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
0035534 41 2005-09-08 d1bg6a1 N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
0037218 328 2005-09-08 d1evya1 Glycerol-3-phosphate dehydrogenase
0049729 1296 2008-09-10 d1txga1 Glycerol-3-phosphate dehydrogenase
0040234 268 2005-09-08 d1ks9a1 Ketopantoate reductase PanE
0038855 26 2005-09-08 d1i36a1 Conserved hypothetical protein MTH1747
0040515 164 2005-09-08 d1lj8a3 Mannitol 2-dehydrogenase
0054098 259 2010-05-31 d2i76a1 ProC C-terminal domain-like
0051796 1229 2008-09-10 d2amfa1 ProC C-terminal domain-like
0053659 1337 2010-05-31 d1yqga1 ProC C-terminal domain-like
0051872 18 2008-09-10 d2b0ja1 HMD dimerization domain-like
0054551 254 2010-05-31 d2pv7a1 TyrA dimerization domain-like
0052836 655 2008-09-10 d2g5ca1 TyrA dimerization domain-like
0052564 585 2008-09-10 d2f1ka1 TyrA dimerization domain-like