SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Six-hairpin glycosidases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 26 SUPERFAMILY models representing the Six-hairpin glycosidases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052638 255 2008-09-10 d2fbaa1 Glucoamylase
0046953 487 2008-09-10 d1gaia_ Glucoamylase
0038366 199 2005-09-08 d1h12a_ Cellulases catalytic domain
0040233 267 2005-09-08 d1ks8a_ Cellulases catalytic domain
0050704 296 2008-09-10 d1wu4a1 Cellulases catalytic domain
0037466 20 2005-09-08 d1faea_ Cellulases catalytic domain
0050051 132 2008-09-10 d1v5da_ Cellulases catalytic domain
0046166 642 2008-09-10 d1clca1 Cellulases catalytic domain
0049609 753 2008-09-10 d1tf4a1 Cellulases catalytic domain
0038939 261 2005-09-08 d1ia6a_ Cellulases catalytic domain
0047896 331 2008-09-10 d1kwfa_ Cellulases catalytic domain
0046939 744 2008-09-10 d1g87a1 Cellulases catalytic domain
0049995 396 2008-09-10 d1ut9a1 Cellulases catalytic domain
0040358 20 2005-09-08 d1l1ya_ Cellulases catalytic domain
0050765 130 2008-09-10 d1wzza1 Cellulases catalytic domain
0046841 654 2008-09-10 d1fp3a_ N-acylglucosamine (NAG) epimerase
0051759 461 2008-09-10 d2afaa1 N-acylglucosamine (NAG) epimerase
0047123 675 2008-09-10 d1h54a1 Glycosyltransferase family 36 C-terminal domain
0050085 1822 2008-09-10 d1v7wa1 Glycosyltransferase family 36 C-terminal domain
0049896 742 2008-09-10 d1ug9a1 Bacterial glucoamylase C-terminal domain-like
0047967 1082 2008-09-10 d1lf6a1 Bacterial glucoamylase C-terminal domain-like
0048326 1068 2008-09-10 d1nc5a_ Hypothetical protein YteR
0050146 156 2008-09-10 d1vd5a_ Glycosyl Hydrolase Family 88
0054447 228 2010-05-31 d2p0va1 CPF0428-like
0054299 209 2010-05-31 d2nvpa1 CPF0428-like
0054222 741 2010-05-31 d2jg0a1 Trehalase-like