SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Terpenoid cyclases/Protein prenyltransferases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Terpenoid cyclases/Protein prenyltransferases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041184 232 2005-09-08 d1n1ba1 Terpenoid cyclase N-terminal domain
0053354 803 2008-09-10 d5eaua1 Terpenoid cyclase N-terminal domain
0050379 1302 2008-09-10 d1w6ka1 Terpene synthases
0053305 1580 2008-09-10 d2sqca1 Terpene synthases
0050380 614 2008-09-10 d1w6ka2 Terpene synthases
0053306 821 2008-09-10 d2sqca2 Terpene synthases
0046298 1331 2008-09-10 d1dceb_ Protein prenyltransferases
0048283 1274 2008-09-10 d1n4qb_ Protein prenyltransferases
0046282 685 2008-09-10 d1d8db_ Protein prenyltransferases
0047273 1374 2008-09-10 d1hzfa_ Complement components
0049012 946 2008-09-10 d1qqfa_ Complement components
0035832 297 2005-09-08 d1c3da_ Complement components