SUPERFAMILY 1.75 HMM library and genome assignments server

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Citrate synthase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the Citrate synthase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039109 463 2005-09-08 d1ioma_ Citrate synthase
0035069 461 2005-09-08 d1aj8a_ Citrate synthase
0041736 464 2005-09-08 d1o7xa_ Citrate synthase
0036140 438 2005-09-08 d1csha_ Citrate synthase
0034881 448 2005-09-08 d1a59a_ Citrate synthase
0039891 460 2005-09-08 d1k3pa_ Citrate synthase
0036138 431 2005-09-08 d1csca_ Citrate synthase
0045234 437 2005-09-08 d2ctsa_ Citrate synthase