SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Acid phosphatase/Vanadium-dependent haloperoxidase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Acid phosphatase/Vanadium-dependent haloperoxidase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036249 378 2005-09-08 d1d2ta_ Type 2 phosphatidic acid phosphatase, PAP2
0042804 154 2005-09-08 d1qi9a_ Haloperoxidase (bromoperoxidase)
0042785 42 2005-09-08 d1qhba_ Haloperoxidase (bromoperoxidase)
0044476 45 2005-09-08 d1up8a_ Haloperoxidase (bromoperoxidase)
0044900 86 2005-09-08 d1vnsa_ Chloroperoxidase