SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

DNA repair protein MutS, domain III superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 2 SUPERFAMILY models representing the DNA repair protein MutS, domain III superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036747 411 2005-09-08 d1e3ma1 DNA repair protein MutS, domain III
0037229 410 2005-09-08 d1ewqa1 DNA repair protein MutS, domain III