SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Sec7 domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Sec7 domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051097 856 2008-09-10 d1xsza1 Sec7 domain
0043206 229 2005-09-08 d1re0b_ Sec7 domain
0047880 859 2008-09-10 d1ku1a_ Sec7 domain
0042242 278 2005-09-08 d1pbva_ Sec7 domain
0054637 883 2010-05-31 d2r09a1 Sec7 domain
0045924 875 2008-09-10 d1bc9a_ Sec7 domain