SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

ENTH/VHS domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 10 SUPERFAMILY models representing the ENTH/VHS domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047397 587 2008-09-10 d1inza_ ENTH domain
0046653 545 2008-09-10 d1eyha_ ENTH domain
0039767 196 2005-09-08 d1juqa_ VHS domain
0046406 448 2008-09-10 d1dvpa1 VHS domain
0040934 184 2005-09-08 d1mhqa_ VHS domain
0047697 362 2008-09-10 d1jwga_ VHS domain
0046580 632 2008-09-10 d1elka_ VHS domain
0038769 594 2005-09-08 d1hx8a2 Phosphoinositide-binding clathrin adaptor, N-terminal domain
0038572 622 2005-09-08 d1hf8a2 Phosphoinositide-binding clathrin adaptor, N-terminal domain
0049499 295 2008-09-10 d1szaa_ RPR domain (SMART 00582 )