SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Chorismate mutase II superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the Chorismate mutase II superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051272 1045 2008-09-10 d1ybza1 Dimeric chorismate mutase
0052994 746 2008-09-10 d2h9da1 Dimeric chorismate mutase
0052401 998 2008-09-10 d2d8da1 Dimeric chorismate mutase
0036905 255 2005-09-08 d1ecma_ Dimeric chorismate mutase
0045614 32 2005-09-08 d5csma_ Allosteric chorismate mutase
0052958 995 2008-09-10 d2gtvx1 monomeric chorismate mutase
0052736 564 2008-09-10 d2fp1a1 Secreted chorismate mutase-like