SUPERFAMILY 1.75 HMM library and genome assignments server

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Heme oxygenase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the Heme oxygenase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050673 265 2008-09-10 d1wova1 Eukaryotic type heme oxygenase
0047453 269 2008-09-10 d1iw0a_ Eukaryotic type heme oxygenase
0050457 305 2008-09-10 d1we1a_ Eukaryotic type heme oxygenase
0048277 268 2008-09-10 d1n45a_ Eukaryotic type heme oxygenase
0046404 266 2008-09-10 d1dvga_ Eukaryotic type heme oxygenase
0043643 35 2005-09-08 d1sk7a_ Heme oxygenase HemO (PigA)
0047524 242 2008-09-10 d1j77a_ Heme oxygenase HemO (PigA)
0051692 93 2008-09-10 d2a2ma1 TENA/THI-4
0044286 584 2005-09-08 d1udda_ TENA/THI-4
0043377 548 2005-09-08 d1rtwa_ TENA/THI-4
0052925 555 2008-09-10 d2gm8a1 TENA/THI-4
0051513 445 2008-09-10 d1z72a1 TENA/THI-4
0044069 581 2005-09-08 d1to9a_ TENA/THI-4
0052581 429 2008-09-10 d2f2ga1 TENA/THI-4
0050729 64 2008-09-10 d1wwma1 TENA/THI-4
0049145 384 2008-09-10 d1rcwa_ PqqC-like
0048646 355 2008-09-10 d1otva_ PqqC-like