SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Multiheme cytochromes superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 32 SUPERFAMILY models representing the Multiheme cytochromes superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046401 12 2008-09-10 d1duwa_ Cytochrome c3-like
0047493 1566 2008-09-10 d1j0pa_ Cytochrome c3-like
0045497 190 2005-09-08 d3caoa_ Cytochrome c3-like
0047084 537 2008-09-10 d1gyoa_ Cytochrome c3-like
0052296 486 2008-09-10 d2ctha_ Cytochrome c3-like
0047319 1310 2008-09-10 d1i77a_ Cytochrome c3-like
0049254 265 2008-09-10 d1rwja_ Cytochrome c3-like
0037345 306 2005-09-08 d1f22a_ Cytochrome c3-like
0044945 154 2005-09-08 d1wada_ Cytochrome c3-like
0048634 402 2008-09-10 d1os6a_ Cytochrome c3-like
0035167 197 2005-09-08 d1aqea_ Cytochrome c3-like
0049967 1227 2008-09-10 d1up9a_ Cytochrome c3-like
0045679 12 2008-09-10 d19hca_ Cytochrome c3-like
0047103 50 2008-09-10 d1h29a_ Cytochrome c3-like
0048560 793 2008-09-10 d1ofwa_ Cytochrome c3-like
0052348 515 2008-09-10 d2cy3a_ Cytochrome c3-like
0046418 106 2008-09-10 d1dxrc_ Photosynthetic reaction centre (cytochrome subunit)
0037264 133 2005-09-08 d1eysc_ Photosynthetic reaction centre (cytochrome subunit)
0049433 574 2008-09-10 d1sp3a_ Di-heme elbow motif
0037571 237 2005-09-08 d1fgja_ Di-heme elbow motif
0048931 1719 2008-09-10 d1qdba_ Di-heme elbow motif
0036731 315 2005-09-08 d1e39a1 Di-heme elbow motif
0039660 163 2005-09-08 d1jnia_ Di-heme elbow motif
0046850 557 2008-09-10 d1fs7a_ Di-heme elbow motif
0048527 750 2008-09-10 d1oaha_ Di-heme elbow motif
0046269 895 2008-09-10 d1d4ca1 Di-heme elbow motif
0047058 1018 2008-09-10 d1gu6a_ Di-heme elbow motif
0048064 2612 2008-09-10 d1m1qa_ Di-heme elbow motif
0038376 59 2005-09-08 d1h21a_ Di-heme elbow motif
0049002 1141 2008-09-10 d1qo8a1 Di-heme elbow motif
0041853 82 2005-09-08 d1ogyb_ Di-heme elbow motif
0046855 1901 2008-09-10 d1ft5a_ Di-heme elbow motif